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DAVID: Database for Annotation, Visualization, and Integrated Discovery.
Dennis G Jr, Sherman BT, Hosack DA, Yang J, Gao W, Lane HC, Lempicki RA. Dennis G Jr, et al. Genome Biol. 2003;4(5):P3. Epub 2003 Apr 3. Genome Biol. 2003. PMID: 12734009
Identifying biological themes within lists of genes with EASE.
Hosack DA, Dennis G Jr, Sherman BT, Lane HC, Lempicki RA. Hosack DA, et al. Genome Biol. 2003;4(10):R70. doi: 10.1186/gb-2003-4-10-r70. Epub 2003 Sep 11. Genome Biol. 2003. PMID: 14519205 Free PMC article.
DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.
Huang DW, Sherman BT, Tan Q, Kir J, Liu D, Bryant D, Guo Y, Stephens R, Baseler MW, Lane HC, Lempicki RA. Huang DW, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W169-75. doi: 10.1093/nar/gkm415. Epub 2007 Jun 18. Nucleic Acids Res. 2007. PMID: 17576678 Free PMC article.
The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists.
Huang DW, Sherman BT, Tan Q, Collins JR, Alvord WG, Roayaei J, Stephens R, Baseler MW, Lane HC, Lempicki RA. Huang DW, et al. Genome Biol. 2007;8(9):R183. doi: 10.1186/gb-2007-8-9-r183. Genome Biol. 2007. PMID: 17784955 Free PMC article.
DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.
Sherman BT, Huang da W, Tan Q, Guo Y, Bour S, Liu D, Stephens R, Baseler MW, Lane HC, Lempicki RA. Sherman BT, et al. BMC Bioinformatics. 2007 Nov 2;8:426. doi: 10.1186/1471-2105-8-426. BMC Bioinformatics. 2007. PMID: 17980028 Free PMC article.
EMAAS: an extensible grid-based rich internet application for microarray data analysis and management.
Barton G, Abbott J, Chiba N, Huang DW, Huang Y, Krznaric M, Mack-Smith J, Saleem A, Sherman BT, Tiwari B, Tomlinson C, Aitman T, Darlington J, Game L, Sternberg MJ, Butcher SA. Barton G, et al. BMC Bioinformatics. 2008 Nov 25;9:493. doi: 10.1186/1471-2105-9-493. BMC Bioinformatics. 2008. PMID: 19032776 Free PMC article.
Extracting biological meaning from large gene lists with DAVID.
Huang da W, Sherman BT, Zheng X, Yang J, Imamichi T, Stephens R, Lempicki RA. Huang da W, et al. Curr Protoc Bioinformatics. 2009 Sep;Chapter 13:Unit 13.11. doi: 10.1002/0471250953.bi1311s27. Curr Protoc Bioinformatics. 2009. PMID: 19728287
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