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The Recipe for Protein Sequence-Based Function Prediction and Its Implementation in the ANNOTATOR Software Environment.
Eisenhaber B, Kuchibhatla D, Sherman W, Sirota FL, Berezovsky IN, Wong WC, Eisenhaber F. Eisenhaber B, et al. Methods Mol Biol. 2016;1415:477-506. doi: 10.1007/978-1-4939-3572-7_25. Methods Mol Biol. 2016. PMID: 27115649
Tachyon search speeds up retrieval of similar sequences by several orders of magnitude.
Tan J, Kuchibhatla D, Sirota FL, Sherman WA, Gattermayer T, Kwoh CY, Eisenhaber F, Schneider G, Maurer-Stroh S. Tan J, et al. Among authors: sherman wa. Bioinformatics. 2012 Jun 15;28(12):1645-6. doi: 10.1093/bioinformatics/bts197. Epub 2012 Apr 23. Bioinformatics. 2012. PMID: 22531216 Free PMC article.
HPMV: human protein mutation viewer - relating sequence mutations to protein sequence architecture and function changes.
Sherman WA, Kuchibhatla DB, Limviphuvadh V, Maurer-Stroh S, Eisenhaber B, Eisenhaber F. Sherman WA, et al. J Bioinform Comput Biol. 2015 Oct;13(5):1550028. doi: 10.1142/S0219720015500286. Epub 2015 Oct 27. J Bioinform Comput Biol. 2015. PMID: 26503432
deconSTRUCT: general purpose protein database search on the substructure level.
Zhang ZH, Bharatham K, Sherman WA, Mihalek I. Zhang ZH, et al. Among authors: sherman wa. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W590-4. doi: 10.1093/nar/gkq489. Epub 2010 Jun 3. Nucleic Acids Res. 2010. PMID: 20522512 Free PMC article.
Powerful sequence similarity search methods and in-depth manual analyses can identify remote homologs in many apparently "orphan" viral proteins.
Kuchibhatla DB, Sherman WA, Chung BY, Cook S, Schneider G, Eisenhaber B, Karlin DG. Kuchibhatla DB, et al. Among authors: sherman wa. J Virol. 2014 Jan;88(1):10-20. doi: 10.1128/JVI.02595-13. Epub 2013 Oct 23. J Virol. 2014. PMID: 24155369 Free PMC article.
McCay ("Mac") Vernon (1928-2013).
Sherman WA. Sherman WA. Am Psychol. 2014 Sep;69(6):624. doi: 10.1037/a0037283. Am Psychol. 2014. PMID: 25197842
Unusual case of heartworm disease in a cat.
Sherman WA, Wechsler SJ. Sherman WA, et al. Vet Med Small Anim Clin. 1975 Nov;70(11):1320. Vet Med Small Anim Clin. 1975. PMID: 1041812 No abstract available.