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Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels.
Shevchenko A, Wilm M, Vorm O, Mann M. Shevchenko A, et al. Anal Chem. 1996 Mar 1;68(5):850-8. doi: 10.1021/ac950914h. Anal Chem. 1996. PMID: 8779443
A silver-stained one-dimensional gel of a fraction from yeast proteins was analyzed by nano-electrospray tandem mass spectrometry. ...This work removes a major obstacle to the low-level sequence analysis of proteins separated on polyacrylamide gels....
A silver-stained one-dimensional gel of a fraction from yeast proteins was analyzed by nano-electrospray tandem mass spectrome
Horizontal carryover of proteins on one-dimensional polyacrylamide gels may jeopardize gel-enhanced liquid chromatography mass spectrometry proteomic interpretations.
Knaust A, Shevchenko A, Shevchenko A. Knaust A, et al. Anal Biochem. 2012 Feb 15;421(2):779-81. doi: 10.1016/j.ab.2011.11.011. Epub 2011 Nov 19. Anal Biochem. 2012. PMID: 22155053
Mass spectrometric identification of gel-separated proteins is a cornerstone of many proteomic efforts. Often the protein compositions of two neighboring lanes (typically representing the experiment and control) are compared assuming that proteins are separated only in …
Mass spectrometric identification of gel-separated proteins is a cornerstone of many proteomic efforts. Often the protein composition …
Sequence similarity-based proteomics in insects: characterization of the larvae venom of the Brazilian moth Cerodirphia speciosa.
Shevchenko A, de Sousa MM, Waridel P, Bittencourt ST, de Sousa MV, Shevchenko A. Shevchenko A, et al. J Proteome Res. 2005 May-Jun;4(3):862-9. doi: 10.1021/pr0500051. J Proteome Res. 2005. PMID: 15952733
Using a combination of tandem mass spectrometric sequencing and sequence similarity searches, we characterized the larvae venom of the moth Cerodirphia speciosa, which belongs to the Saturniidae family of the Lepidoptera order. ...
Using a combination of tandem mass spectrometric sequencing and sequence similarity searches, we characterized the larvae venom of th …
MultiTag: multiple error-tolerant sequence tag search for the sequence-similarity identification of proteins by mass spectrometry.
Sunyaev S, Liska AJ, Golod A, Shevchenko A, Shevchenko A. Sunyaev S, et al. Anal Chem. 2003 Mar 15;75(6):1307-15. doi: 10.1021/ac026199a. Anal Chem. 2003. PMID: 12659190
The MultiTag method presented here assigns statistical significance to matches of multiple error-tolerant sequence tags to a database entry and ranks alignments by their significance. ...
The MultiTag method presented here assigns statistical significance to matches of multiple error-tolerant sequence tags to a database …
Nanoelectrospray tandem mass spectrometry and sequence similarity searching for identification of proteins from organisms with unknown genomes.
Shevchenko A, Sunyaev S, Liska A, Bork P, Shevchenko A. Shevchenko A, et al. Methods Mol Biol. 2003;211:221-34. doi: 10.1385/1-59259-342-9:221. Methods Mol Biol. 2003. PMID: 12489434 No abstract available.
"De novo" sequencing of peptides recovered from in-gel digested proteins by nanoelectrospray tandem mass spectrometry.
Shevchenko A, Chernushevic I, Shevchenko A, Wilm M, Mann M. Shevchenko A, et al. Mol Biotechnol. 2002 Jan;20(1):107-18. doi: 10.1385/mb:20:1:107. Mol Biotechnol. 2002. PMID: 11876295
Proteins separated by one-dimensional or two-dimensional gel electrophoresis can be digested in-gel with trypsin and the recovered peptides can be sequenced de novo using triple quadrupole or hybrid quadrupole time-of-flight instruments equipped with a nanoelectrospray ion …
Proteins separated by one-dimensional or two-dimensional gel electrophoresis can be digested in-gel with trypsin and the recovered peptides …
A comparative analysis of an orthologous proteomic environment in the yeasts Saccharomyces cerevisiae and Schizosaccharomyces pombe.
Roguev A, Shevchenko A, Schaft D, Thomas H, Stewart AF, Shevchenko A. Roguev A, et al. Mol Cell Proteomics. 2004 Feb;3(2):125-32. doi: 10.1074/mcp.M300081-MCP200. Epub 2003 Nov 15. Mol Cell Proteomics. 2004. PMID: 14617822
We speculate that conservation of the core components of protein assemblies and variability of hyperlinks represents a general principle in the molecular organization of eukaryotic proteomes....
We speculate that conservation of the core components of protein assemblies and variability of hyperlinks represents a general princi …
Shotgun Lipidomics Combined with Laser Capture Microdissection: A Tool To Analyze Histological Zones in Cryosections of Tissues.
Knittelfelder O, Traikov S, Vvedenskaya O, Schuhmann A, Segeletz S, Shevchenko A, Shevchenko A. Knittelfelder O, et al. Anal Chem. 2018 Aug 21;90(16):9868-9878. doi: 10.1021/acs.analchem.8b02004. Epub 2018 Jul 30. Anal Chem. 2018. PMID: 30004672
We identified metabolically distinct periportal (pp) and pericentral (pc) zones by immunostaining of 20 μm thick cryosections of a healthy mouse liver. LCM was used to ablate, catapult, and collect the tissue material from 10 to 20 individual zones covering a total …
We identified metabolically distinct periportal (pp) and pericentral (pc) zones by immunostaining of 20 μm thick cryosections of a he …
De Novo peptide sequencing by nanoelectrospray tandem mass spectrometry using triple quadrupole and quadrupole/time-of-flight instruments.
Shevchenko A, Chernushevich I, Wilm M, Mann M. Shevchenko A, et al. Methods Mol Biol. 2000;146:1-16. doi: 10.1385/1-59259-045-4:1. Methods Mol Biol. 2000. PMID: 10948493 Review. No abstract available.
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