Shi L - Search Results

1

Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing.

Fang LT, Zhu B, Zhao Y, Chen W, Yang Z, Kerrigan L, Langenbach K, de Mars M, Lu C, Idler K, Jacob H, Zheng Y, Ren L, Yu Y, Jaeger E, Schroth GP, Abaan OD, Talsania K, Lack J, Shen TW, Chen Z, Stanbouly S, Tran B, Shetty J, Kriga Y, Meerzaman D, Nguyen C, Petitjean V, Sultan M, Cam M, Mehta M, Hung T, Peters E, Kalamegham R, Sahraeian SME, Mohiyuddin M, Guo Y, Yao L, Song L, Lam HYK, Drabek J, Vojta P, Maestro R, Gasparotto D, Kõks S, Reimann E, Scherer A, Nordlund J, Liljedahl U, Jensen RV, Pirooznia M, Li Z, Xiao C, Sherry ST, Kusko R, Moos M, Donaldson E, Tezak Z, Ning B, Tong W, Li J, Duerken-Hughes P, Catalanotti C, Maheshwari S, Shuga J, Liang WS, Keats J, Adkins J, Tassone E, Zismann V, McDaniel T, Trent J, Foox J, Butler D, Mason CE, Hong H, Shi L, Wang C, Xiao W; Somatic Mutation Working Group of Sequencing Quality Control Phase II Consortium. Fang LT, et al. Among authors: shi l. Nat Biotechnol. 2021 Sep;39(9):1151-1160. doi: 10.1038/s41587-021-00993-6. Epub 2021 Sep 9. Nat Biotechnol. 2021. PMID: 34504347 Free PMC article.

2

Prediction of estrogen receptor binding for 58,000 chemicals using an integrated system of a tree-based model with structural alerts.

Hong H, Tong W, Fang H, Shi L, Xie Q, Wu J, Perkins R, Walker JD, Branham W, Sheehan DM. Hong H, et al. Among authors: shi l. Environ Health Perspect. 2002 Jan;110(1):29-36. doi: 10.1289/ehp.0211029. Environ Health Perspect. 2002. PMID: 11781162 Free PMC article.

3

Multi-class tumor classification by discriminant partial least squares using microarray gene expression data and assessment of classification models.

Tan Y, Shi L, Tong W, Hwang GT, Wang C. Tan Y, et al. Among authors: shi l. Comput Biol Chem. 2004 Jul;28(3):235-44. doi: 10.1016/j.compbiolchem.2004.05.002. Comput Biol Chem. 2004. PMID: 15261154

4

Assessment of prediction confidence and domain extrapolation of two structure-activity relationship models for predicting estrogen receptor binding activity.

Tong W, Xie Q, Hong H, Shi L, Fang H, Perkins R. Tong W, et al. Among authors: shi l. Environ Health Perspect. 2004 Aug;112(12):1249-54. doi: 10.1289/txg.7125. Environ Health Perspect. 2004. PMID: 15345371 Free PMC article.

5

QA/QC: challenges and pitfalls facing the microarray community and regulatory agencies.

Shi L, Tong W, Goodsaid F, Frueh FW, Fang H, Han T, Fuscoe JC, Casciano DA. Shi L, et al. Expert Rev Mol Diagn. 2004 Nov;4(6):761-77. doi: 10.1586/14737159.4.6.761. Expert Rev Mol Diagn. 2004. PMID: 15525219 Review.

6

Classification of cDNA array genes that have a highly significant discriminative power due to their unique distribution in four brain regions.

Fang H, Tong W, Shi L, Jakab RL, Bowyer JF. Fang H, et al. Among authors: shi l. DNA Cell Biol. 2004 Oct;23(10):661-74. doi: 10.1089/dna.2004.23.661. DNA Cell Biol. 2004. PMID: 15585124

7

Multiclass Decision Forest--a novel pattern recognition method for multiclass classification in microarray data analysis.

Hong H, Tong W, Perkins R, Fang H, Xie Q, Shi L. Hong H, et al. Among authors: shi l. DNA Cell Biol. 2004 Oct;23(10):685-94. doi: 10.1089/dna.2004.23.685. DNA Cell Biol. 2004. PMID: 15585126

8

Using decision forest to classify prostate cancer samples on the basis of SELDI-TOF MS data: assessing chance correlation and prediction confidence.

Tong W, Xie Q, Hong H, Shi L, Fang H, Perkins R, Petricoin EF. Tong W, et al. Among authors: shi l. Environ Health Perspect. 2004 Nov;112(16):1622-7. doi: 10.1289/txg.7109. Environ Health Perspect. 2004. PMID: 15598613 Free PMC article.

9

Multi-class cancer classification by total principal component regression (TPCR) using microarray gene expression data.

Tan Y, Shi L, Tong W, Wang C. Tan Y, et al. Among authors: shi l. Nucleic Acids Res. 2005 Jan 7;33(1):56-65. doi: 10.1093/nar/gki144. Print 2005. Nucleic Acids Res. 2005. PMID: 15640445 Free PMC article.

10

Microarray scanner calibration curves: characteristics and implications.

Shi L, Tong W, Su Z, Han T, Han J, Puri RK, Fang H, Frueh FW, Goodsaid FM, Guo L, Branham WS, Chen JJ, Xu ZA, Harris SC, Hong H, Xie Q, Perkins RG, Fuscoe JC. Shi L, et al. BMC Bioinformatics. 2005 Jul 15;6 Suppl 2(Suppl 2):S11. doi: 10.1186/1471-2105-6-S2-S11. BMC Bioinformatics. 2005. PMID: 16026596 Free PMC article.

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