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Facile means for quantifying microRNA expression by real-time PCR.
Shi R, Chiang VL. Shi R, et al. Biotechniques. 2005 Oct;39(4):519-25. doi: 10.2144/000112010. Biotechniques. 2005. PMID: 16235564
RNA silencing in plants by the expression of siRNA duplexes.
Lu S, Shi R, Tsao CC, Yi X, Li L, Chiang VL. Lu S, et al. Among authors: shi r. Nucleic Acids Res. 2004 Dec 2;32(21):e171. doi: 10.1093/nar/gnh170. Nucleic Acids Res. 2004. PMID: 15576678 Free PMC article.
Towards a systems approach for lignin biosynthesis in Populus trichocarpa: transcript abundance and specificity of the monolignol biosynthetic genes.
Shi R, Sun YH, Li Q, Heber S, Sederoff R, Chiang VL. Shi R, et al. Plant Cell Physiol. 2010 Jan;51(1):144-63. doi: 10.1093/pcp/pcp175. Epub 2009 Dec 8. Plant Cell Physiol. 2010. PMID: 19996151
Computational prediction of plant miRNA targets.
Sun YH, Lu S, Shi R, Chiang VL. Sun YH, et al. Among authors: shi r. Methods Mol Biol. 2011;744:175-86. doi: 10.1007/978-1-61779-123-9_12. Methods Mol Biol. 2011. PMID: 21533693
Poly(T) adaptor RT-PCR.
Shi R, Sun YH, Zhang XH, Chiang VL. Shi R, et al. Methods Mol Biol. 2012;822:53-66. doi: 10.1007/978-1-61779-427-8_4. Methods Mol Biol. 2012. PMID: 22144191
MicroRNAs in trees.
Sun YH, Shi R, Zhang XH, Chiang VL, Sederoff RR. Sun YH, et al. Among authors: shi r. Plant Mol Biol. 2012 Sep;80(1):37-53. doi: 10.1007/s11103-011-9864-z. Epub 2011 Dec 8. Plant Mol Biol. 2012. PMID: 22161564 Review.
A standard reaction condition and a single HPLC separation system are sufficient for estimation of monolignol biosynthetic pathway enzyme activities.
Liu J, Shi R, Li Q, Sederoff RR, Chiang VL. Liu J, et al. Among authors: shi r. Planta. 2012 Sep;236(3):879-85. doi: 10.1007/s00425-012-1688-9. Epub 2012 Jun 24. Planta. 2012. PMID: 22729823
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