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Relating protein adduction to gene expression changes: a systems approach.
Zhang B, Shi Z, Duncan DT, Prodduturi N, Marnett LJ, Liebler DC. Zhang B, et al. Among authors: Shi Z. Mol Biosyst. 2011 Jul;7(7):2118-27. doi: 10.1039/c1mb05014a. Epub 2011 May 19. Mol Biosyst. 2011. PMID: 21594272 Free PMC article.
Graph Algorithms for Condensing and Consolidating Gene Set Analysis Results.
Savage SR, Shi Z, Liao Y, Zhang B. Savage SR, et al. Among authors: Shi Z. Mol Cell Proteomics. 2019 Aug 9;18(8 suppl 1):S141-S152. doi: 10.1074/mcp.TIR118.001263. Epub 2019 May 29. Mol Cell Proteomics. 2019. PMID: 31142576 Free PMC article.
Colorectal Cancer Cell Line Proteomes Are Representative of Primary Tumors and Predict Drug Sensitivity.
Wang J, Mouradov D, Wang X, Jorissen RN, Chambers MC, Zimmerman LJ, Vasaikar S, Love CG, Li S, Lowes K, Leuchowius KJ, Jousset H, Weinstock J, Yau C, Mariadason J, Shi Z, Ban Y, Chen X, Coffey RJC, Slebos RJC, Burgess AW, Liebler DC, Zhang B, Sieber OM. Wang J, et al. Among authors: Shi Z. Gastroenterology. 2017 Oct;153(4):1082-1095. doi: 10.1053/j.gastro.2017.06.008. Epub 2017 Jun 16. Gastroenterology. 2017. PMID: 28625833 Free PMC article.
Nuclear factor of activated T-cell activity is associated with metastatic capacity in colon cancer.
Tripathi MK, Deane NG, Zhu J, An H, Mima S, Wang X, Padmanabhan S, Shi Z, Prodduturi N, Ciombor KK, Chen X, Washington MK, Zhang B, Beauchamp RD. Tripathi MK, et al. Among authors: Shi Z. Cancer Res. 2014 Dec 1;74(23):6947-57. doi: 10.1158/0008-5472.CAN-14-1592. Epub 2014 Oct 15. Cancer Res. 2014. PMID: 25320007 Free PMC article.
Fast network centrality analysis using GPUs.
Shi Z, Zhang B. Shi Z, et al. BMC Bioinformatics. 2011 May 12;12:149. doi: 10.1186/1471-2105-12-149. BMC Bioinformatics. 2011. PMID: 21569426 Free PMC article.
WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013.
Wang J, Duncan D, Shi Z, Zhang B. Wang J, et al. Among authors: Shi Z. Nucleic Acids Res. 2013 Jul;41(Web Server issue):W77-83. doi: 10.1093/nar/gkt439. Epub 2013 May 23. Nucleic Acids Res. 2013. PMID: 23703215 Free PMC article.
GLAD4U: deriving and prioritizing gene lists from PubMed literature.
Jourquin J, Duncan D, Shi Z, Zhang B. Jourquin J, et al. Among authors: Shi Z. BMC Genomics. 2012;13 Suppl 8(Suppl 8):S20. doi: 10.1186/1471-2164-13-S8-S20. Epub 2012 Dec 17. BMC Genomics. 2012. PMID: 23282288 Free PMC article.
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