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Scaling of dorsal-ventral patterning by embryo size-dependent degradation of Spemann's organizer signals.
Inomata H, Shibata T, Haraguchi T, Sasai Y. Inomata H, et al. Among authors: shibata t. Cell. 2013 Jun 6;153(6):1296-311. doi: 10.1016/j.cell.2013.05.004. Cell. 2013. PMID: 23746842
Modeling the self-organized phosphatidylinositol lipid signaling system in chemotactic cells using quantitative image analysis.
Shibata T, Nishikawa M, Matsuoka S, Ueda M. Shibata T, et al. J Cell Sci. 2012 Nov 1;125(Pt 21):5138-50. doi: 10.1242/jcs.108373. Epub 2012 Aug 16. J Cell Sci. 2012. PMID: 22899720
Cortical Polarity of the RING Protein PAR-2 Is Maintained by Exchange Rate Kinetics at the Cortical-Cytoplasmic Boundary.
Arata Y, Hiroshima M, Pack CG, Ramanujam R, Motegi F, Nakazato K, Shindo Y, Wiseman PW, Sawa H, Kobayashi TJ, Brandão HB, Shibata T, Sako Y. Arata Y, et al. Among authors: shibata t. Cell Rep. 2016 Aug 23;16(8):2156-2168. doi: 10.1016/j.celrep.2016.07.047. Epub 2016 Aug 11. Cell Rep. 2016. PMID: 27524610
Wave Propagation of Junctional Remodeling in Collective Cell Movement of Epithelial Tissue: Numerical Simulation Study.
Hiraiwa T, Kuranaga E, Shibata T. Hiraiwa T, et al. Among authors: shibata t. Front Cell Dev Biol. 2017 Jul 19;5:66. doi: 10.3389/fcell.2017.00066. eCollection 2017. Front Cell Dev Biol. 2017. PMID: 28770197 Free PMC article.
A Switch-like Activation Relay of EGFR-ERK Signaling Regulates a Wave of Cellular Contractility for Epithelial Invagination.
Ogura Y, Wen FL, Sami MM, Shibata T, Hayashi S. Ogura Y, et al. Among authors: shibata t. Dev Cell. 2018 Jul 16;46(2):162-172.e5. doi: 10.1016/j.devcel.2018.06.004. Epub 2018 Jul 5. Dev Cell. 2018. PMID: 29983336
Self-organization and advective transport in the cell polarity formation for asymmetric cell division.
Seirin Lee S, Shibata T. Seirin Lee S, et al. Among authors: shibata t. J Theor Biol. 2015 Oct 7;382:1-14. doi: 10.1016/j.jtbi.2015.06.032. Epub 2015 Jul 2. J Theor Biol. 2015. PMID: 26141641
Left-right asymmetric cell intercalation drives directional collective cell movement in epithelial morphogenesis.
Sato K, Hiraiwa T, Maekawa E, Isomura A, Shibata T, Kuranaga E. Sato K, et al. Among authors: shibata t. Nat Commun. 2015 Dec 10;6:10074. doi: 10.1038/ncomms10074. Nat Commun. 2015. PMID: 26656655 Free PMC article.
Synthetic mammalian pattern formation driven by differential diffusivity of Nodal and Lefty.
Sekine R, Shibata T, Ebisuya M. Sekine R, et al. Among authors: shibata t. Nat Commun. 2018 Dec 21;9(1):5456. doi: 10.1038/s41467-018-07847-x. Nat Commun. 2018. PMID: 30575724 Free PMC article.
Epithelial Folding Driven by Apical or Basal-Lateral Modulation: Geometric Features, Mechanical Inference, and Boundary Effects.
Wen FL, Wang YC, Shibata T. Wen FL, et al. Among authors: shibata t. Biophys J. 2017 Jun 20;112(12):2683-2695. doi: 10.1016/j.bpj.2017.05.012. Biophys J. 2017. PMID: 28636924 Free PMC article.
Directional sensing of deformed cells under faint gradients.
Baba A, Hiraiwa T, Shibata T. Baba A, et al. Among authors: shibata t. Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Dec;86(6 Pt 1):060901. doi: 10.1103/PhysRevE.86.060901. Epub 2012 Dec 14. Phys Rev E Stat Nonlin Soft Matter Phys. 2012. PMID: 23367886
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