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Evolutionary aspects of plastid proteins involved in transcription: the transcription of a tiny genome is mediated by a complicated machinery.
Yagi Y, Shiina T. Yagi Y, et al. Among authors: shiina t. Transcription. 2012 Nov-Dec;3(6):290-4. doi: 10.4161/trns.21810. Epub 2012 Aug 14. Transcription. 2012. PMID: 22889841 Free PMC article.
Vascular plant one-zinc-finger protein 1/2 transcription factors regulate abiotic and biotic stress responses in Arabidopsis.
Nakai Y, Nakahira Y, Sumida H, Takebayashi K, Nagasawa Y, Yamasaki K, Akiyama M, Ohme-Takagi M, Fujiwara S, Shiina T, Mitsuda N, Fukusaki E, Kubo Y, Sato MH. Nakai Y, et al. Among authors: shiina t. Plant J. 2013 Mar;73(5):761-75. doi: 10.1111/tpj.12069. Epub 2013 Feb 12. Plant J. 2013. PMID: 23167462
Recent advances in the study of chloroplast gene expression and its evolution.
Yagi Y, Shiina T. Yagi Y, et al. Among authors: shiina t. Front Plant Sci. 2014 Feb 25;5:61. doi: 10.3389/fpls.2014.00061. eCollection 2014. Front Plant Sci. 2014. PMID: 24611069 Free PMC article. Review.
Structural dynamics of cereal mitochondrial genomes as revealed by complete nucleotide sequencing of the wheat mitochondrial genome.
Ogihara Y, Yamazaki Y, Murai K, Kanno A, Terachi T, Shiina T, Miyashita N, Nasuda S, Nakamura C, Mori N, Takumi S, Murata M, Futo S, Tsunewaki K. Ogihara Y, et al. Among authors: shiina t. Nucleic Acids Res. 2005 Oct 31;33(19):6235-50. doi: 10.1093/nar/gki925. Print 2005. Nucleic Acids Res. 2005. PMID: 16260473 Free PMC article.
Eukaryotic-type plastid nucleoid protein pTAC3 is essential for transcription by the bacterial-type plastid RNA polymerase.
Yagi Y, Ishizaki Y, Nakahira Y, Tozawa Y, Shiina T. Yagi Y, et al. Among authors: shiina t. Proc Natl Acad Sci U S A. 2012 May 8;109(19):7541-6. doi: 10.1073/pnas.1119403109. Epub 2012 Apr 23. Proc Natl Acad Sci U S A. 2012. PMID: 22529394 Free PMC article.
Chloroplast-mediated activation of plant immune signalling in Arabidopsis.
Nomura H, Komori T, Uemura S, Kanda Y, Shimotani K, Nakai K, Furuichi T, Takebayashi K, Sugimoto T, Sano S, Suwastika IN, Fukusaki E, Yoshioka H, Nakahira Y, Shiina T. Nomura H, et al. Among authors: shiina t. Nat Commun. 2012 Jun 26;3:926. doi: 10.1038/ncomms1926. Nat Commun. 2012. PMID: 22735454
Plastid RNA polymerases, promoters, and transcription regulators in higher plants.
Shiina T, Tsunoyama Y, Nakahira Y, Khan MS. Shiina T, et al. Int Rev Cytol. 2005;244:1-68. doi: 10.1016/S0074-7696(05)44001-2. Int Rev Cytol. 2005. PMID: 16157177 Review.
A nuclear-encoded sigma factor, Arabidopsis SIG6, recognizes sigma-70 type chloroplast promoters and regulates early chloroplast development in cotyledons.
Ishizaki Y, Tsunoyama Y, Hatano K, Ando K, Kato K, Shinmyo A, Kobori M, Takeba G, Nakahira Y, Shiina T. Ishizaki Y, et al. Among authors: shiina t. Plant J. 2005 Apr;42(2):133-44. doi: 10.1111/j.1365-313X.2005.02362.x. Plant J. 2005. PMID: 15807777
Blue light-induced transcription of plastid-encoded psbD gene is mediated by a nuclear-encoded transcription initiation factor, AtSig5.
Tsunoyama Y, Ishizaki Y, Morikawa K, Kobori M, Nakahira Y, Takeba G, Toyoshima Y, Shiina T. Tsunoyama Y, et al. Among authors: shiina t. Proc Natl Acad Sci U S A. 2004 Mar 2;101(9):3304-9. doi: 10.1073/pnas.0308362101. Epub 2004 Feb 19. Proc Natl Acad Sci U S A. 2004. PMID: 14976253 Free PMC article.
A role of the -35 element in the initiation of transcription at psbA promoter in tobacco plastids.
Hayashi K, Shiina T, Ishii N, Iwai K, Ishizaki Y, Morikawa K, Toyoshima Y. Hayashi K, et al. Among authors: shiina t. Plant Cell Physiol. 2003 Mar;44(3):334-41. doi: 10.1093/pcp/pcg041. Plant Cell Physiol. 2003. PMID: 12668780
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