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133 results
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Nanobiology of RNA polymerase: biological consequence of inhomogeneity in reactant.
Shimamoto N. Shimamoto N. Chem Rev. 2013 Nov 13;113(11):8400-22. doi: 10.1021/cr400006b. Epub 2013 Sep 27. Chem Rev. 2013. PMID: 24074222 Review. No abstract available.
Role of 100S ribosomes in bacterial decay period.
Shcherbakova K, Nakayama H, Shimamoto N. Shcherbakova K, et al. Among authors: shimamoto n. Genes Cells. 2015 Oct;20(10):789-801. doi: 10.1111/gtc.12273. Epub 2015 Aug 20. Genes Cells. 2015. PMID: 26290418
Modern and simple construction of plasmid: saving time and cost.
Nakayama H, Shimamoto N. Nakayama H, et al. Among authors: shimamoto n. J Microbiol. 2014 Nov;52(11):891-7. doi: 10.1007/s12275-014-4501-6. Epub 2014 Oct 31. J Microbiol. 2014. PMID: 25359266 Review.
Transcription elongation. Heterogeneous tracking of RNA polymerase and its biological implications.
Imashimizu M, Shimamoto N, Oshima T, Kashlev M. Imashimizu M, et al. Among authors: shimamoto n. Transcription. 2014;5(1):e28285. doi: 10.4161/trns.28285. Transcription. 2014. PMID: 25764114 Free PMC article. Review.
RNA polymerase can track a DNA groove during promoter search.
Sakata-Sogawa K, Shimamoto N. Sakata-Sogawa K, et al. Among authors: shimamoto n. Proc Natl Acad Sci U S A. 2004 Oct 12;101(41):14731-5. doi: 10.1073/pnas.0406441101. Epub 2004 Oct 6. Proc Natl Acad Sci U S A. 2004. PMID: 15469913 Free PMC article.
Generality of the branched pathway in transcription initiation by Escherichia coli RNA polymerase.
Susa M, Sen R, Shimamoto N. Susa M, et al. Among authors: shimamoto n. J Biol Chem. 2002 May 3;277(18):15407-12. doi: 10.1074/jbc.M112481200. Epub 2002 Feb 19. J Biol Chem. 2002. PMID: 11854291
Assay for movements of RNA polymerase along DNA.
Shimamoto N. Shimamoto N. Methods Enzymol. 2003;371:50-70. doi: 10.1016/S0076-6879(03)71004-0. Methods Enzymol. 2003. PMID: 14712691 No abstract available.
Structural coupling between RNA polymerase composition and DNA supercoiling in coordinating transcription: a global role for the omega subunit?
Geertz M, Travers A, Mehandziska S, Sobetzko P, Chandra-Janga S, Shimamoto N, Muskhelishvili G. Geertz M, et al. Among authors: shimamoto n. mBio. 2011 Aug 2;2(4):e00034-11. doi: 10.1128/mBio.00034-11. Print 2011. mBio. 2011. PMID: 21810966 Free PMC article.
Formation of repressor-inducer-operator ternary complex: negative cooperativity of d-camphor binding to CamR.
Aramaki H, Kabata H, Takeda S, Itou H, Nakayama H, Shimamoto N. Aramaki H, et al. Among authors: shimamoto n. Genes Cells. 2011 Dec;16(12):1200-7. doi: 10.1111/j.1365-2443.2011.01563.x. Epub 2011 Nov 17. Genes Cells. 2011. PMID: 22093184
The Role of Pyrophosphorolysis in the Initiation-to-Elongation Transition by E. coli RNA Polymerase.
Imashimizu M, Kireeva ML, Lubkowska L, Kashlev M, Shimamoto N. Imashimizu M, et al. Among authors: shimamoto n. J Mol Biol. 2019 Jun 28;431(14):2528-2542. doi: 10.1016/j.jmb.2019.04.020. Epub 2019 Apr 26. J Mol Biol. 2019. PMID: 31029704
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