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A branched pathway in the early stage of transcription by Escherichia coli RNA polymerase.
Kubori T, Shimamoto N. Kubori T, et al. Among authors: shimamoto n. J Mol Biol. 1996 Mar 1;256(3):449-57. doi: 10.1006/jmbi.1996.0100. J Mol Biol. 1996. PMID: 8604130
Role for σ38 in prolonged survival of Escherichia coli in Drosophila melanogaster.
Shiratsuchi A, Shimamoto N, Nitta M, Tuan TQ, Firdausi A, Gawasawa M, Yamamoto K, Ishihama A, Nakanishi Y. Shiratsuchi A, et al. Among authors: shimamoto n. J Immunol. 2014 Jan 15;192(2):666-75. doi: 10.4049/jimmunol.1300968. Epub 2013 Dec 13. J Immunol. 2014. PMID: 24337747
Direct observation of DNA rotation during transcription by Escherichia coli RNA polymerase.
Harada Y, Ohara O, Takatsuki A, Itoh H, Shimamoto N, Kinosita K Jr. Harada Y, et al. Among authors: shimamoto n. Nature. 2001 Jan 4;409(6816):113-5. doi: 10.1038/35051126. Nature. 2001. PMID: 11343125
GroEL is involved in activation of Escherichia coli RNA polymerase devoid of the omega subunit in vivo.
Mukherjee K, Nagai H, Shimamoto N, Chatterji D. Mukherjee K, et al. Among authors: shimamoto n. Eur J Biochem. 1999 Nov;266(1):228-35. doi: 10.1046/j.1432-1327.1999.00848.x. Eur J Biochem. 1999. PMID: 10542069
Temperature-sensitive mutations in the alpha subunit gene of Escherichia coli RNA polymerase.
Ishihama A, Shimamoto N, Aiba H, Kawakami K, Nashimoto H, Tsugawa A, Uchida H. Ishihama A, et al. Among authors: shimamoto n. J Mol Biol. 1980 Feb 25;137(2):137-50. doi: 10.1016/0022-2836(80)90321-6. J Mol Biol. 1980. PMID: 6154799 No abstract available.
Regions of the Escherichia coli primary sigma factor sigma70 that are involved in interaction with RNA polymerase core enzyme.
Nagai H, Shimamoto N. Nagai H, et al. Among authors: shimamoto n. Genes Cells. 1997 Dec;2(12):725-34. doi: 10.1046/j.1365-2443.1997.1600357.x. Genes Cells. 1997. PMID: 9544701
Polymerase arrest at the lambdaP(R) promoter during transcription initiation.
Sen R, Nagai H, Shimamoto N. Sen R, et al. Among authors: shimamoto n. J Biol Chem. 2000 Apr 14;275(15):10899-904. doi: 10.1074/jbc.275.15.10899. J Biol Chem. 2000. PMID: 10753887
., and Shimamoto, N. (1996) J. Mol. Biol. 256, 449-457). Here we report biochemical isolation of the complexes arrested at the lambdaP(R) promoter and an analysis of their structure by DNA and protein footprintings. ...
., and Shimamoto, N. (1996) J. Mol. Biol. 256, 449-457). Here we report biochemical isolation of the complexes arrested at the …
One-dimensional diffusion of proteins along DNA. Its biological and chemical significance revealed by single-molecule measurements.
Shimamoto N. Shimamoto N. J Biol Chem. 1999 May 28;274(22):15293-6. doi: 10.1074/jbc.274.22.15293. J Biol Chem. 1999. PMID: 10336412 No abstract available.
Reduction in abortive transcription from the lambdaPR promoter by mutations in region 3 of the sigma70 subunit of Escherichia coli RNA polymerase.
Sen R, Nagai H, Hernandez VJ, Shimamoto N. Sen R, et al. Among authors: shimamoto n. J Biol Chem. 1998 Apr 17;273(16):9872-7. doi: 10.1074/jbc.273.16.9872. J Biol Chem. 1998. PMID: 9545328
., and Shimamoto, N. (1996) J. Mol. Biol. 256, 449-457), were formed by the mutant enzymes. However, they accumulated to a lesser extent than for the wild-type enzyme, due both to faster dissociation and conversion into inactive complexes. ...
., and Shimamoto, N. (1996) J. Mol. Biol. 256, 449-457), were formed by the mutant enzymes. However, they accumulated to a les …
Release of the sigma subunit of Escherichia coli DNA-dependent RNA polymerase depends mainly on time elapsed after the start of initiation, not on length of product RNA.
Shimamoto N, Kamigochi T, Utiyama H. Shimamoto N, et al. J Biol Chem. 1986 Sep 5;261(25):11859-65. J Biol Chem. 1986. PMID: 2427513
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