Shimizu Y - Search Results

1

Chemical Landscape for Tissue Clearing Based on Hydrophilic Reagents.

Tainaka K, Murakami TC, Susaki EA, Shimizu C, Saito R, Takahashi K, Hayashi-Takagi A, Sekiya H, Arima Y, Nojima S, Ikemura M, Ushiku T, Shimizu Y, Murakami M, Tanaka KF, Iino M, Kasai H, Sasaoka T, Kobayashi K, Miyazono K, Morii E, Isa T, Fukayama M, Kakita A, Ueda HR. Tainaka K, et al. Among authors: shimizu y, shimizu c. Cell Rep. 2018 Aug 21;24(8):2196-2210.e9. doi: 10.1016/j.celrep.2018.07.056. Cell Rep. 2018. PMID: 30134179 Free article.

2

Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis.

Susaki EA, Tainaka K, Perrin D, Kishino F, Tawara T, Watanabe TM, Yokoyama C, Onoe H, Eguchi M, Yamaguchi S, Abe T, Kiyonari H, Shimizu Y, Miyawaki A, Yokota H, Ueda HR. Susaki EA, et al. Among authors: shimizu y. Cell. 2014 Apr 24;157(3):726-39. doi: 10.1016/j.cell.2014.03.042. Epub 2014 Apr 17. Cell. 2014. PMID: 24746791 Free article.

3

Mammalian Reverse Genetics without Crossing Reveals Nr3a as a Short-Sleeper Gene.

Sunagawa GA, Sumiyama K, Ukai-Tadenuma M, Perrin D, Fujishima H, Ukai H, Nishimura O, Shi S, Ohno RI, Narumi R, Shimizu Y, Tone D, Ode KL, Kuraku S, Ueda HR. Sunagawa GA, et al. Among authors: shimizu y. Cell Rep. 2016 Jan 26;14(3):662-677. doi: 10.1016/j.celrep.2015.12.052. Epub 2016 Jan 7. Cell Rep. 2016. PMID: 26774482 Free article.

4

Mass spectrometry-based absolute quantification reveals rhythmic variation of mouse circadian clock proteins.

Narumi R, Shimizu Y, Ukai-Tadenuma M, Ode KL, Kanda GN, Shinohara Y, Sato A, Matsumoto K, Ueda HR. Narumi R, et al. Among authors: shimizu y. Proc Natl Acad Sci U S A. 2016 Jun 14;113(24):E3461-7. doi: 10.1073/pnas.1603799113. Epub 2016 May 31. Proc Natl Acad Sci U S A. 2016. PMID: 27247408 Free PMC article.

5

A three-dimensional single-cell-resolution whole-brain atlas using CUBIC-X expansion microscopy and tissue clearing.

Murakami TC, Mano T, Saikawa S, Horiguchi SA, Shigeta D, Baba K, Sekiya H, Shimizu Y, Tanaka KF, Kiyonari H, Iino M, Mochizuki H, Tainaka K, Ueda HR. Murakami TC, et al. Among authors: shimizu y. Nat Neurosci. 2018 Apr;21(4):625-637. doi: 10.1038/s41593-018-0109-1. Epub 2018 Mar 5. Nat Neurosci. 2018. PMID: 29507408

6

Cell-free synthesis of stable isotope-labeled internal standards for targeted quantitative proteomics.

Narumi R, Masuda K, Tomonaga T, Adachi J, Ueda HR, Shimizu Y. Narumi R, et al. Among authors: shimizu y. Synth Syst Biotechnol. 2018 Feb 21;3(2):97-104. doi: 10.1016/j.synbio.2018.02.004. eCollection 2018 Jun. Synth Syst Biotechnol. 2018. PMID: 29900422 Free PMC article. Review.

7

Versatile whole-organ/body staining and imaging based on electrolyte-gel properties of biological tissues.

Susaki EA, Shimizu C, Kuno A, Tainaka K, Li X, Nishi K, Morishima K, Ono H, Ode KL, Saeki Y, Miyamichi K, Isa K, Yokoyama C, Kitaura H, Ikemura M, Ushiku T, Shimizu Y, Saito T, Saido TC, Fukayama M, Onoe H, Touhara K, Isa T, Kakita A, Shibayama M, Ueda HR. Susaki EA, et al. Among authors: shimizu y, shimizu c. Nat Commun. 2020 Apr 27;11(1):1982. doi: 10.1038/s41467-020-15906-5. Nat Commun. 2020. PMID: 32341345 Free PMC article.

8

Mass spectrometry-based absolute quantification of amyloid proteins in pathology tissue specimens: Merits and limitations.

Ogawa M, Shintani-Domoto Y, Nagashima Y, Ode KL, Sato A, Shimizu Y, Ohashi K, Roehrl MHA, Ushiku T, Ueda HR, Fukayama M. Ogawa M, et al. Among authors: shimizu y. PLoS One. 2020 Jul 1;15(7):e0235143. doi: 10.1371/journal.pone.0235143. eCollection 2020. PLoS One. 2020. PMID: 32609750 Free PMC article.

9

Versatile and multiplexed mass spectrometry-based absolute quantification with cell-free-synthesized internal standard peptides.

Masuda K, Kasahara K, Narumi R, Shimojo M, Shimizu Y. Masuda K, et al. Among authors: shimizu y. J Proteomics. 2022 Jan 16;251:104393. doi: 10.1016/j.jprot.2021.104393. Epub 2021 Oct 20. J Proteomics. 2022. PMID: 34678518 Free article.

10

Protein-based peptide-bond formation by aminoacyl-tRNA protein transferase.

Watanabe K, Toh Y, Suto K, Shimizu Y, Oka N, Wada T, Tomita K. Watanabe K, et al. Among authors: shimizu y. Nature. 2007 Oct 18;449(7164):867-71. doi: 10.1038/nature06167. Epub 2007 Sep 23. Nature. 2007. PMID: 17891155

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