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Changes in body shape implicate cuticle stretch in C. elegans growth control.
Cells Dev. 2022 Jun;170:203780. doi: 10.1016/j.cdev.2022.203780. Epub 2022 Apr 19.
Cells Dev. 2022.
PMID: 35452889
Free article.
Linking the Salmonella enterica 1,2-Propanediol Utilization Bacterial Microcompartment Shell to the Enzymatic Core via the Shell Protein PduB.
Kennedy NW, Mills CE, Abrahamson CH, Archer AG, Shirman S, Jewett MC, Mangan NM, Tullman-Ercek D.
Kennedy NW, et al. Among authors: shirman s.
J Bacteriol. 2022 Sep 20;204(9):e0057621. doi: 10.1128/jb.00576-21. Epub 2022 May 16.
J Bacteriol. 2022.
PMID: 35575582
Free PMC article.
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Vertex protein PduN tunes encapsulated pathway performance by dictating bacterial metabolosome morphology.
Mills CE, Waltmann C, Archer AG, Kennedy NW, Abrahamson CH, Jackson AD, Roth EW, Shirman S, Jewett MC, Mangan NM, Olvera de la Cruz M, Tullman-Ercek D.
Mills CE, et al. Among authors: shirman s.
Nat Commun. 2022 Jun 29;13(1):3746. doi: 10.1038/s41467-022-31279-3.
Nat Commun. 2022.
PMID: 35768404
Free PMC article.
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Model selection of chaotic systems from data with hidden variables using sparse data assimilation.
Ribera H, Shirman S, Nguyen AV, Mangan NM.
Ribera H, et al. Among authors: shirman s.
Chaos. 2022 Jun;32(6):063101. doi: 10.1063/5.0066066.
Chaos. 2022.
PMID: 35778121
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Characterization of larval growth in C. elegans cuticle mutants.
Nyaanga J, Shirman S, Mangan NM, Andersen EC.
Nyaanga J, et al. Among authors: shirman s.
MicroPubl Biol. 2022 Nov 4;2022:10.17912/micropub.biology.000662. doi: 10.17912/micropub.biology.000662. eCollection 2022.
MicroPubl Biol. 2022.
PMID: 36411799
Free PMC article.
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A unifying view of synchronization for data assimilation in complex nonlinear networks.
Abarbanel HDI, Shirman S, Breen D, Kadakia N, Rey D, Armstrong E, Margoliash D.
Abarbanel HDI, et al. Among authors: shirman s.
Chaos. 2017 Dec;27(12):126802. doi: 10.1063/1.5001816.
Chaos. 2017.
PMID: 29289057
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Response to "Comment on 'A unifying view of synchronization for data assimilation in complex nonlinear networks'" [Chaos 28, 028101 (2018)].
Abarbanel HDI, Shirman S, Breen D, Kadakia N, Rey D, Armstrong E, Margoliash D.
Abarbanel HDI, et al. Among authors: shirman s.
Chaos. 2018 Feb;28(2):028102. doi: 10.1063/1.5017246.
Chaos. 2018.
PMID: 29495669
No abstract available.
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Machine Learning: Deepest Learning as Statistical Data Assimilation Problems.
Abarbanel HDI, Rozdeba PJ, Shirman S.
Abarbanel HDI, et al. Among authors: shirman s.
Neural Comput. 2018 Aug;30(8):2025-2055. doi: 10.1162/neco_a_01094. Epub 2018 Jun 12.
Neural Comput. 2018.
PMID: 29894650
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