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Transcriptional enhancers: from properties to genome-wide predictions.
Shlyueva D, Stampfel G, Stark A. Shlyueva D, et al. Nat Rev Genet. 2014 Apr;15(4):272-86. doi: 10.1038/nrg3682. Epub 2014 Mar 11. Nat Rev Genet. 2014. PMID: 24614317 Review.
Hormone-responsive enhancer-activity maps reveal predictive motifs, indirect repression, and targeting of closed chromatin.
Shlyueva D, Stelzer C, Gerlach D, Yáñez-Cuna JO, Rath M, Boryń ŁM, Arnold CD, Stark A. Shlyueva D, et al. Mol Cell. 2014 Apr 10;54(1):180-192. doi: 10.1016/j.molcel.2014.02.026. Epub 2014 Mar 27. Mol Cell. 2014. PMID: 24685159 Free article.
Uncovering cis-regulatory sequence requirements for context-specific transcription factor binding.
Yáñez-Cuna JO, Dinh HQ, Kvon EZ, Shlyueva D, Stark A. Yáñez-Cuna JO, et al. Among authors: shlyueva d. Genome Res. 2012 Oct;22(10):2018-30. doi: 10.1101/gr.132811.111. Epub 2012 Apr 25. Genome Res. 2012. PMID: 22534400 Free PMC article.
Genome-Wide Ultrabithorax Binding Analysis Reveals Highly Targeted Genomic Loci at Developmental Regulators and a Potential Connection to Polycomb-Mediated Regulation.
Shlyueva D, Meireles-Filho AC, Pagani M, Stark A. Shlyueva D, et al. PLoS One. 2016 Aug 30;11(8):e0161997. doi: 10.1371/journal.pone.0161997. eCollection 2016. PLoS One. 2016. PMID: 27575958 Free PMC article.
Probing the canonicity of the Wnt/Wingless signaling pathway.
Franz A, Shlyueva D, Brunner E, Stark A, Basler K. Franz A, et al. Among authors: shlyueva d. PLoS Genet. 2017 Apr 3;13(4):e1006700. doi: 10.1371/journal.pgen.1006700. eCollection 2017 Apr. PLoS Genet. 2017. PMID: 28369070 Free PMC article.
Optimizing sgRNA position markedly improves the efficiency of CRISPR/dCas9-mediated transcriptional repression.
Radzisheuskaya A, Shlyueva D, Müller I, Helin K. Radzisheuskaya A, et al. Among authors: shlyueva d. Nucleic Acids Res. 2016 Oct 14;44(18):e141. doi: 10.1093/nar/gkw583. Epub 2016 Jun 28. Nucleic Acids Res. 2016. PMID: 27353328 Free PMC article.
PRMT5 methylome profiling uncovers a direct link to splicing regulation in acute myeloid leukemia.
Radzisheuskaya A, Shliaha PV, Grinev V, Lorenzini E, Kovalchuk S, Shlyueva D, Gorshkov V, Hendrickson RC, Jensen ON, Helin K. Radzisheuskaya A, et al. Among authors: shlyueva d. Nat Struct Mol Biol. 2019 Nov;26(11):999-1012. doi: 10.1038/s41594-019-0313-z. Epub 2019 Oct 14. Nat Struct Mol Biol. 2019. PMID: 31611688 Free PMC article.
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