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Genomic diversity and antimicrobial resistance of Vibrio cholerae isolates from Africa: a PulseNet Africa initiative using nanopore sequencing to enhance genomic surveillance.
Foster-Nyarko E, Able-Thomas S, Adade NE, Adade R, Anne JCB, Antwi L, Bah Y, Boateng G, Carleton H, Chaima D, Chilengi R, Coulibaly KJ, Derra FA, Didon D, Dimuna C, Dosso M, Drammeh MM, Ferjani S, Holt KE, Jatta R, Kalule JB, Kanteh A, Kette HF, Khan D, Kouadio NKN, Lee C, Mantina H, Mulenga G, Mwaba J, Nyang F, Owusu-Okyere G, Rowland J, Seck A, Sesay AK, Smith A, Smith P, Soma D, Tau N, Tchuinte PLS, Tientcheu PM, Sokoni C, Vakou SN, Vubil D. Foster-Nyarko E, et al. Among authors: able thomas s. Microb Genom. 2025 Dec;11(12):001586. doi: 10.1099/mgen.0.001586. Microb Genom. 2025. PMID: 41369527 Free PMC article.
Rapid inference of antibiotic susceptibility phenotype of uropathogens using metagenomic sequencing with neighbor typing.
Carroll AC, Mortimer L, Ghosh H, Reuter S, Grundmann H, Brinda K, Hanage WP, Li A, Paterson A, Purssell A, Rooney A, Yee NR, Coburn B, Able-Thomas S, Antonio M, McGeer A, MacFadden DR. Carroll AC, et al. Among authors: able thomas s. Microbiol Spectr. 2025 Jan 7;13(1):e0136624. doi: 10.1128/spectrum.01366-24. Epub 2024 Nov 29. Microbiol Spectr. 2025. PMID: 39611823 Free PMC article.
Prediction of genetic relatedness of Escherichia coli using neighbor typing: a tool for rapid outbreak detection.
Carroll AC, Mortimer L, Ghosh H, Reuter S, Grundmann H, Brinda K, Hanage WP, Li A, Paterson A, Purssell A, Rooney AM, Yee NR, Coburn B, Able-Thomas S, Antonio M, McGeer A, MacFadden DR. Carroll AC, et al. Among authors: able thomas s. Antimicrob Agents Chemother. 2026 Mar 4;70(3):e0107125. doi: 10.1128/aac.01071-25. Epub 2026 Jan 26. Antimicrob Agents Chemother. 2026. PMID: 41586495 Free PMC article.