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106 results
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Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence.
Blom N, Sicheritz-Pontén T, Gupta R, Gammeltoft S, Brunak S. Blom N, et al. Proteomics. 2004 Jun;4(6):1633-49. doi: 10.1002/pmic.200300771. Proteomics. 2004. PMID: 15174133 Review.
Linear motif atlas for phosphorylation-dependent signaling.
Miller ML, Jensen LJ, Diella F, Jørgensen C, Tinti M, Li L, Hsiung M, Parker SA, Bordeaux J, Sicheritz-Ponten T, Olhovsky M, Pasculescu A, Alexander J, Knapp S, Blom N, Bork P, Li S, Cesareni G, Pawson T, Turk BE, Yaffe MB, Brunak S, Linding R. Miller ML, et al. Sci Signal. 2008 Sep 2;1(35):ra2. doi: 10.1126/scisignal.1159433. Sci Signal. 2008. PMID: 18765831 Free PMC article.
GenePublisher: Automated analysis of DNA microarray data.
Knudsen S, Workman C, Sicheritz-Ponten T, Friis C. Knudsen S, et al. Nucleic Acids Res. 2003 Jul 1;31(13):3471-6. doi: 10.1093/nar/gkg629. Nucleic Acids Res. 2003. PMID: 12824347 Free PMC article.
Genome update: prediction of secreted proteins in 225 bacterial proteomes.
Bendtsen JD, Binnewies TT, Hallin PF, Sicheritz-Pontén T, Ussery DW. Bendtsen JD, et al. Microbiology (Reading). 2005 Jun;151(Pt 6):1725-1727. doi: 10.1099/mic.0.28029-0. Microbiology (Reading). 2005. PMID: 15941981 Review. No abstract available.
Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins.
Diella F, Cameron S, Gemünd C, Linding R, Via A, Kuster B, Sicheritz-Pontén T, Blom N, Gibson TJ. Diella F, et al. BMC Bioinformatics. 2004 Jun 22;5:79. doi: 10.1186/1471-2105-5-79. BMC Bioinformatics. 2004. PMID: 15212693 Free PMC article.
Reads2Type: a web application for rapid microbial taxonomy identification.
Saputra D, Rasmussen S, Larsen MV, Haddad N, Sperotto MM, Aarestrup FM, Lund O, Sicheritz-Pontén T. Saputra D, et al. BMC Bioinformatics. 2015 Nov 25;16:398. doi: 10.1186/s12859-015-0829-0. BMC Bioinformatics. 2015. PMID: 26608174 Free PMC article.
Identification of phosphorylation sites in protein kinase A substrates using artificial neural networks and mass spectrometry.
Hjerrild M, Stensballe A, Rasmussen TE, Kofoed CB, Blom N, Sicheritz-Ponten T, Larsen MR, Brunak S, Jensen ON, Gammeltoft S. Hjerrild M, et al. J Proteome Res. 2004 May-Jun;3(3):426-33. doi: 10.1021/pr0341033. J Proteome Res. 2004. PMID: 15253423
InterMap3D: predicting and visualizing co-evolving protein residues.
Gouveia-Oliveira R, Roque FS, Wernersson R, Sicheritz-Ponten T, Sackett PW, Mølgaard A, Pedersen AG. Gouveia-Oliveira R, et al. Bioinformatics. 2009 Aug 1;25(15):1963-5. doi: 10.1093/bioinformatics/btp335. Epub 2009 Jun 15. Bioinformatics. 2009. PMID: 19528088
Multilocus sequence typing of total-genome-sequenced bacteria.
Larsen MV, Cosentino S, Rasmussen S, Friis C, Hasman H, Marvig RL, Jelsbak L, Sicheritz-Pontén T, Ussery DW, Aarestrup FM, Lund O. Larsen MV, et al. J Clin Microbiol. 2012 Apr;50(4):1355-61. doi: 10.1128/JCM.06094-11. Epub 2012 Jan 11. J Clin Microbiol. 2012. PMID: 22238442 Free PMC article.
Analysis of two large functionally uncharacterized regions in the Methanopyrus kandleri AV19 genome.
Jensen LJ, Skovgaard M, Sicheritz-Pontén T, Jørgensen MK, Lundegaard C, Pedersen CC, Petersen N, Ussery D. Jensen LJ, et al. BMC Genomics. 2003 Apr 2;4(1):12. doi: 10.1186/1471-2164-4-12. Epub 2003 Apr 2. BMC Genomics. 2003. PMID: 12697059 Free PMC article.
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