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Three periods of regulatory innovation during vertebrate evolution.
Lowe CB, Kellis M, Siepel A, Raney BJ, Clamp M, Salama SR, Kingsley DM, Lindblad-Toh K, Haussler D. Lowe CB, et al. Among authors: siepel a. Science. 2011 Aug 19;333(6045):1019-24. doi: 10.1126/science.1202702. Science. 2011. PMID: 21852499 Free PMC article.
Efficient approximations for learning phylogenetic HMM models from data.
Jojic V, Jojic N, Meek C, Geiger D, Siepel A, Haussler D, Heckerman D. Jojic V, et al. Among authors: siepel a. Bioinformatics. 2004 Aug 4;20 Suppl 1:i161-8. doi: 10.1093/bioinformatics/bth917. Bioinformatics. 2004. PMID: 15262795
MOTIVATION: We consider models useful for learning an evolutionary or phylogenetic tree from data consisting of DNA sequences corresponding to the leaves of the tree. In particular, we consider a general probabilistic model described in Siepel and Haussler that we c …
MOTIVATION: We consider models useful for learning an evolutionary or phylogenetic tree from data consisting of DNA sequences corresponding …
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.
Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K, Clawson H, Spieth J, Hillier LW, Richards S, Weinstock GM, Wilson RK, Gibbs RA, Kent WJ, Miller W, Haussler D. Siepel A, et al. Genome Res. 2005 Aug;15(8):1034-50. doi: 10.1101/gr.3715005. Epub 2005 Jul 15. Genome Res. 2005. PMID: 16024819 Free PMC article.
The UCSC Genome Browser Database: update 2006.
Hinrichs AS, Karolchik D, Baertsch R, Barber GP, Bejerano G, Clawson H, Diekhans M, Furey TS, Harte RA, Hsu F, Hillman-Jackson J, Kuhn RM, Pedersen JS, Pohl A, Raney BJ, Rosenbloom KR, Siepel A, Smith KE, Sugnet CW, Sultan-Qurraie A, Thomas DJ, Trumbower H, Weber RJ, Weirauch M, Zweig AS, Haussler D, Kent WJ. Hinrichs AS, et al. Among authors: siepel a. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D590-8. doi: 10.1093/nar/gkj144. Nucleic Acids Res. 2006. PMID: 16381938 Free PMC article.
114 results