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Membrane Position Dependency of the pKa and Conductivity of the Protein Ion Channel.
J Membr Biol. 2018 Jun;251(3):393-404. doi: 10.1007/s00232-018-0013-3. Epub 2018 Jan 16.
J Membr Biol. 2018.
PMID: 29340712
Free PMC article.
Soft wall ion channel in continuum representation with application to modeling ion currents in α-hemolysin.
Simakov NA, Kurnikova MG.
Simakov NA, et al.
J Phys Chem B. 2010 Nov 25;114(46):15180-90. doi: 10.1021/jp1046062. Epub 2010 Oct 28.
J Phys Chem B. 2010.
PMID: 21028776
Free PMC article.
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pH-triggered conformational switching of the diphtheria toxin T-domain: the roles of N-terminal histidines.
Kurnikov IV, Kyrychenko A, Flores-Canales JC, Rodnin MV, Simakov N, Vargas-Uribe M, Posokhov YO, Kurnikova M, Ladokhin AS.
Kurnikov IV, et al.
J Mol Biol. 2013 Aug 9;425(15):2752-64. doi: 10.1016/j.jmb.2013.04.030. Epub 2013 May 3.
J Mol Biol. 2013.
PMID: 23648837
Free PMC article.
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A Distal Disulfide Bridge in OXA-1 β-Lactamase Stabilizes the Catalytic Center and Alters the Dynamics of the Specificity Determining Ω Loop.
Simakov N, Leonard DA, Smith JC, Wymore T, Szarecka A.
Simakov N, et al.
J Phys Chem B. 2017 Apr 20;121(15):3285-3296. doi: 10.1021/acs.jpcb.6b07884. Epub 2016 Oct 7.
J Phys Chem B. 2017.
PMID: 27668669
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Homolytic Cleavage of Both Heme-Bound Hydrogen Peroxide and Hydrogen Sulfide Leads to the Formation of Sulfheme.
Arbelo-Lopez HD, Simakov NA, Smith JC, Lopez-Garriga J, Wymore T.
Arbelo-Lopez HD, et al. Among authors: simakov na.
J Phys Chem B. 2016 Aug 4;120(30):7319-31. doi: 10.1021/acs.jpcb.6b02839. Epub 2016 Jul 22.
J Phys Chem B. 2016.
PMID: 27357070
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Effect of lipid composition on the "membrane response" induced by a fusion peptide.
Volynsky PE, Polyansky AA, Simakov NA, Arseniev AS, Efremov RG.
Volynsky PE, et al. Among authors: simakov na.
Biochemistry. 2005 Nov 8;44(44):14626-37. doi: 10.1021/bi0514562.
Biochemistry. 2005.
PMID: 16262262
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