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Why do RNA viruses recombine?
Simon-Loriere E, Holmes EC. Simon-Loriere E, et al. Nat Rev Microbiol. 2011 Jul 4;9(8):617-26. doi: 10.1038/nrmicro2614. Nat Rev Microbiol. 2011. PMID: 21725337 Free PMC article. Review.
RNA structures facilitate recombination-mediated gene swapping in HIV-1.
Simon-Loriere E, Martin DP, Weeks KM, Negroni M. Simon-Loriere E, et al. J Virol. 2010 Dec;84(24):12675-82. doi: 10.1128/JVI.01302-10. Epub 2010 Sep 29. J Virol. 2010. PMID: 20881047 Free PMC article.
RNA structures, genomic organization and selection of recombinant HIV.
Simon-Loriere E, Rossolillo P, Negroni M. Simon-Loriere E, et al. RNA Biol. 2011 Mar-Apr;8(2):280-6. doi: 10.4161/rna.8.2.15193. Epub 2011 Mar 1. RNA Biol. 2011. PMID: 21422815 Review.
Gene duplication is infrequent in the recent evolutionary history of RNA viruses.
Simon-Loriere E, Holmes EC. Simon-Loriere E, et al. Mol Biol Evol. 2013 Jun;30(6):1263-9. doi: 10.1093/molbev/mst044. Epub 2013 Mar 13. Mol Biol Evol. 2013. PMID: 23486612
The effect of gene overlapping on the rate of RNA virus evolution.
Simon-Loriere E, Holmes EC, Pagán I. Simon-Loriere E, et al. Mol Biol Evol. 2013 Aug;30(8):1916-28. doi: 10.1093/molbev/mst094. Epub 2013 May 17. Mol Biol Evol. 2013. PMID: 23686658 Free PMC article.
Distinct lineages of Ebola virus in Guinea during the 2014 West African epidemic.
Simon-Loriere E, Faye O, Faye O, Koivogui L, Magassouba N, Keita S, Thiberge JM, Diancourt L, Bouchier C, Vandenbogaert M, Caro V, Fall G, Buchmann JP, Matranga CB, Sabeti PC, Manuguerra JC, Holmes EC, Sall AA. Simon-Loriere E, et al. Nature. 2015 Aug 6;524(7563):102-4. doi: 10.1038/nature14612. Epub 2015 Jun 24. Nature. 2015. PMID: 26106863
Drivers of Dengue Intrahost Evolution.
Simon-Lorière E, Vignuzzi M. Simon-Lorière E, et al. Cell Host Microbe. 2017 Sep 13;22(3):260-261. doi: 10.1016/j.chom.2017.08.015. Cell Host Microbe. 2017. PMID: 28910632
FHL1 is a major host factor for chikungunya virus infection.
Meertens L, Hafirassou ML, Couderc T, Bonnet-Madin L, Kril V, Kümmerer BM, Labeau A, Brugier A, Simon-Loriere E, Burlaud-Gaillard J, Doyen C, Pezzi L, Goupil T, Rafasse S, Vidalain PO, Bertrand-Legout A, Gueneau L, Juntas-Morales R, Ben Yaou R, Bonne G, de Lamballerie X, Benkirane M, Roingeard P, Delaugerre C, Lecuit M, Amara A. Meertens L, et al. Nature. 2019 Oct;574(7777):259-263. doi: 10.1038/s41586-019-1578-4. Epub 2019 Sep 25. Nature. 2019. PMID: 31554973
Genomic Epidemiology of 2015-2016 Zika Virus Outbreak in Cape Verde.
Faye O, de Lourdes Monteiro M, Vrancken B, Prot M, Lequime S, Diarra M, Ndiaye O, Valdez T, Tavarez S, Ramos J, da Veiga Leal S, Pires C, Moreira A, Tavares MF, Fernandes L, Barreto JN, do Céu Teixeira M, de Lima Mendonça MDL, Gomes CCDSL, Castellon MS, Ma L, Lemoine F, Gámbaro-Roglia F, Delaune D, Fall G, Fall IS, Diop M, Sakuntabhai A, Loucoubar C, Lemey P, Holmes EC, Faye O, Sall AA, Simon-Loriere E. Faye O, et al. Among authors: simon loriere e. Emerg Infect Dis. 2020 Jun;26(6):1084-1090. doi: 10.3201/eid2606.190928. Emerg Infect Dis. 2020. PMID: 32441631 Free PMC article.
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