Simone D - Search Results

1

HmtDB 2016: data update, a better performing query system and human mitochondrial DNA haplogroup predictor.

Clima R, Preste R, Calabrese C, Diroma MA, Santorsola M, Scioscia G, Simone D, Shen L, Gasparre G, Attimonelli M. Clima R, et al. Among authors: simone d. Nucleic Acids Res. 2017 Jan 4;45(D1):D698-D706. doi: 10.1093/nar/gkw1066. Epub 2016 Nov 28. Nucleic Acids Res. 2017. PMID: 27899581 Free PMC article.

2

HmtDB, a genomic resource for mitochondrion-based human variability studies.

Rubino F, Piredda R, Calabrese FM, Simone D, Lang M, Calabrese C, Petruzzella V, Tommaseo-Ponzetta M, Gasparre G, Attimonelli M. Rubino F, et al. Among authors: simone d. Nucleic Acids Res. 2012 Jan;40(Database issue):D1150-9. doi: 10.1093/nar/gkr1086. Epub 2011 Dec 1. Nucleic Acids Res. 2012. PMID: 22139932 Free PMC article.

3

The reference human nuclear mitochondrial sequences compilation validated and implemented on the UCSC genome browser.

Simone D, Calabrese FM, Lang M, Gasparre G, Attimonelli M. Simone D, et al. BMC Genomics. 2011 Oct 20;12:517. doi: 10.1186/1471-2164-12-517. BMC Genomics. 2011. PMID: 22013967 Free PMC article.

4

Primates and mouse NumtS in the UCSC Genome Browser.

Calabrese FM, Simone D, Attimonelli M. Calabrese FM, et al. Among authors: simone d. BMC Bioinformatics. 2012 Mar 28;13 Suppl 4(Suppl 4):S15. doi: 10.1186/1471-2105-13-S4-S15. BMC Bioinformatics. 2012. PMID: 22536961 Free PMC article.

5

MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing.

Calabrese C, Simone D, Diroma MA, Santorsola M, Guttà C, Gasparre G, Picardi E, Pesole G, Attimonelli M. Calabrese C, et al. Among authors: simone d. Bioinformatics. 2014 Nov 1;30(21):3115-7. doi: 10.1093/bioinformatics/btu483. Epub 2014 Jul 14. Bioinformatics. 2014. PMID: 25028726 Free PMC article.

6

Extraction and annotation of human mitochondrial genomes from 1000 Genomes Whole Exome Sequencing data.

Diroma MA, Calabrese C, Simone D, Santorsola M, Calabrese FM, Gasparre G, Attimonelli M. Diroma MA, et al. Among authors: simone d. BMC Genomics. 2014;15 Suppl 3(Suppl 3):S2. doi: 10.1186/1471-2164-15-S3-S2. Epub 2014 May 6. BMC Genomics. 2014. PMID: 25077682 Free PMC article.

7

Searching for a needle in the haystack: comparing six methods to evaluate heteroplasmy in difficult sequence context.

Kurelac I, Lang M, Zuntini R, Calabrese C, Simone D, Vicario S, Santamaria M, Attimonelli M, Romeo G, Gasparre G. Kurelac I, et al. Among authors: simone d. Biotechnol Adv. 2012 Jan-Feb;30(1):363-71. doi: 10.1016/j.biotechadv.2011.06.001. Epub 2011 Jun 13. Biotechnol Adv. 2012. PMID: 21689740

8

Polymorphic NumtS trace human population relationships.

Lang M, Sazzini M, Calabrese FM, Simone D, Boattini A, Romeo G, Luiselli D, Attimonelli M, Gasparre G. Lang M, et al. Among authors: simone d. Hum Genet. 2012 May;131(5):757-71. doi: 10.1007/s00439-011-1125-3. Epub 2011 Dec 8. Hum Genet. 2012. PMID: 22160368

9

Genome sequence of the polychlorinated-biphenyl degrader Pseudomonas pseudoalcaligenes KF707.

Triscari-Barberi T, Simone D, Calabrese FM, Attimonelli M, Hahn KR, Amoako KK, Turner RJ, Fedi S, Zannoni D. Triscari-Barberi T, et al. Among authors: simone d. J Bacteriol. 2012 Aug;194(16):4426-7. doi: 10.1128/JB.00722-12. J Bacteriol. 2012. PMID: 22843571 Free PMC article.

10

Intra-individual purifying selection on mitochondrial DNA variants during human oogenesis.

De Fanti S, Vicario S, Lang M, Simone D, Magli C, Luiselli D, Gianaroli L, Romeo G. De Fanti S, et al. Among authors: simone d. Hum Reprod. 2017 May 1;32(5):1100-1107. doi: 10.1093/humrep/dex051. Hum Reprod. 2017. PMID: 28333293 Free PMC article.

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