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An overview of multiple sequence alignment.
Simossis V, Kleinjung J, Heringa J. Simossis V, et al. Curr Protoc Bioinformatics. 2003 Nov;Chapter 3:Unit 3.7. doi: 10.1002/0471250953.bi0307s03. Curr Protoc Bioinformatics. 2003. PMID: 18428699 Review.
Homology-extended sequence alignment.
Simossis VA, Kleinjung J, Heringa J. Simossis VA, et al. Nucleic Acids Res. 2005 Feb 7;33(3):816-24. doi: 10.1093/nar/gki233. Print 2005. Nucleic Acids Res. 2005. PMID: 15699183 Free PMC article.
DIANA-microT web server: elucidating microRNA functions through target prediction.
Maragkakis M, Reczko M, Simossis VA, Alexiou P, Papadopoulos GL, Dalamagas T, Giannopoulos G, Goumas G, Koukis E, Kourtis K, Vergoulis T, Koziris N, Sellis T, Tsanakas P, Hatzigeorgiou AG. Maragkakis M, et al. Among authors: simossis va. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W273-6. doi: 10.1093/nar/gkp292. Epub 2009 Apr 30. Nucleic Acids Res. 2009. PMID: 19406924 Free PMC article.
Accurate microRNA target prediction correlates with protein repression levels.
Maragkakis M, Alexiou P, Papadopoulos GL, Reczko M, Dalamagas T, Giannopoulos G, Goumas G, Koukis E, Kourtis K, Simossis VA, Sethupathy P, Vergoulis T, Koziris N, Sellis T, Tsanakas P, Hatzigeorgiou AG. Maragkakis M, et al. Among authors: simossis va. BMC Bioinformatics. 2009 Sep 18;10:295. doi: 10.1186/1471-2105-10-295. BMC Bioinformatics. 2009. PMID: 19765283 Free PMC article.
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