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Exosomes: proteomic insights and diagnostic potential.
Simpson RJ, Lim JW, Moritz RL, Mathivanan S. Simpson RJ, et al. Expert Rev Proteomics. 2009 Jun;6(3):267-83. doi: 10.1586/epr.09.17. Expert Rev Proteomics. 2009. PMID: 19489699 Review.
CHOMPER: a bioinformatic tool for rapid validation of tandem mass spectrometry search results associated with high-throughput proteomic strategies.
Eddes JS, Kapp EA, Frecklington DF, Connolly LM, Layton MJ, Moritz RL, Simpson RJ. Eddes JS, et al. Among authors: simpson rj. Proteomics. 2002 Sep;2(9):1097-103. doi: 10.1002/1615-9861(200209)2:9<1097::AID-PROT1097>3.0.CO;2-X. Proteomics. 2002. PMID: 12362328
An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis.
Kapp EA, Sch├╝tz F, Connolly LM, Chakel JA, Meza JE, Miller CA, Fenyo D, Eng JK, Adkins JN, Omenn GS, Simpson RJ. Kapp EA, et al. Among authors: simpson rj. Proteomics. 2005 Aug;5(13):3475-90. doi: 10.1002/pmic.200500126. Proteomics. 2005. PMID: 16047398
Application of 2-D free-flow electrophoresis/RP-HPLC for proteomic analysis of human plasma depleted of multi high-abundance proteins.
Moritz RL, Clippingdale AB, Kapp EA, Eddes JS, Ji H, Gilbert S, Connolly LM, Simpson RJ. Moritz RL, et al. Among authors: simpson rj. Proteomics. 2005 Aug;5(13):3402-13. doi: 10.1002/pmic.200500096. Proteomics. 2005. PMID: 16052629
Proteomic analysis of colorectal cancer: discovering novel biomarkers.
Skandarajah AR, Moritz RL, Tjandra JJ, Simpson RJ. Skandarajah AR, et al. Among authors: simpson rj. Expert Rev Proteomics. 2005 Oct;2(5):681-92. doi: 10.1586/14789450.2.5.681. Expert Rev Proteomics. 2005. PMID: 16209648 Review.
Liquid-based free-flow electrophoresis-reversed-phase HPLC: a proteomic tool.
Moritz RL, Simpson RJ. Moritz RL, et al. Among authors: simpson rj. Nat Methods. 2005 Nov;2(11):863-73. doi: 10.1038/nmeth1105-863. Nat Methods. 2005. PMID: 16278658 No abstract available.
A proteomic approach for unraveling the oncogenic H-Ras protein networks in NIH/3T3 mouse embryonic fibroblast cells.
Park JW, Kim S, Lim KJ, Simpson RJ, Kim YS, Bahk YY. Park JW, et al. Among authors: simpson rj. Proteomics. 2006 Feb;6(4):1175-86. doi: 10.1002/pmic.200500405. Proteomics. 2006. PMID: 16402364
Enhanced analysis of the mouse plasma proteome using cysteine-containing tryptic glycopeptides.
Bernhard OK, Kapp EA, Simpson RJ. Bernhard OK, et al. Among authors: simpson rj. J Proteome Res. 2007 Mar;6(3):987-95. doi: 10.1021/pr0604559. J Proteome Res. 2007. PMID: 17330941
Proteomics-driven cancer biomarker discovery: looking to the future.
Simpson RJ, Bernhard OK, Greening DW, Moritz RL. Simpson RJ, et al. Curr Opin Chem Biol. 2008 Feb;12(1):72-7. doi: 10.1016/j.cbpa.2008.02.010. Epub 2008 Mar 11. Curr Opin Chem Biol. 2008. PMID: 18295612 Review.
Difference gel electrophoresis analysis of Ras-transformed fibroblast cell-derived exosomes.
Ji H, Erfani N, Tauro BJ, Kapp EA, Zhu HJ, Moritz RL, Lim JW, Simpson RJ. Ji H, et al. Among authors: simpson rj. Electrophoresis. 2008 Jun;29(12):2660-71. doi: 10.1002/elps.200800015. Electrophoresis. 2008. PMID: 18494037
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