Skarshewski A - Search Results

1

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes.

Albertsen M, Hugenholtz P, Skarshewski A, Nielsen KL, Tyson GW, Nielsen PH. Albertsen M, et al. Among authors: skarshewski a. Nat Biotechnol. 2013 Jun;31(6):533-8. doi: 10.1038/nbt.2579. Epub 2013 May 26. Nat Biotechnol. 2013. PMID: 23707974

2

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life.

Parks DH, Chuvochina M, Waite DW, Rinke C, Skarshewski A, Chaumeil PA, Hugenholtz P. Parks DH, et al. Among authors: skarshewski a. Nat Biotechnol. 2018 Nov;36(10):996-1004. doi: 10.1038/nbt.4229. Epub 2018 Aug 27. Nat Biotechnol. 2018. PMID: 30148503

3

Genome-Based Microbial Taxonomy Coming of Age.

Hugenholtz P, Skarshewski A, Parks DH. Hugenholtz P, et al. Among authors: skarshewski a. Cold Spring Harb Perspect Biol. 2016 Jun 1;8(6):a018085. doi: 10.1101/cshperspect.a018085. Cold Spring Harb Perspect Biol. 2016. PMID: 26988968 Free PMC article. Review.

4

Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics.

Rinke C, Low S, Woodcroft BJ, Raina JB, Skarshewski A, Le XH, Butler MK, Stocker R, Seymour J, Tyson GW, Hugenholtz P. Rinke C, et al. Among authors: skarshewski a. PeerJ. 2016 Sep 22;4:e2486. doi: 10.7717/peerj.2486. eCollection 2016. PeerJ. 2016. PMID: 27688978 Free PMC article.

5

Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS.

Berkman PJ, Skarshewski A, Lorenc MT, Lai K, Duran C, Ling EY, Stiller J, Smits L, Imelfort M, Manoli S, McKenzie M, Kubaláková M, Šimková H, Batley J, Fleury D, Doležel J, Edwards D. Berkman PJ, et al. Among authors: skarshewski a. Plant Biotechnol J. 2011 Sep;9(7):768-75. doi: 10.1111/j.1467-7652.2010.00587.x. Epub 2011 Feb 28. Plant Biotechnol J. 2011. PMID: 21356002

6

CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction.

Angly FE, Dennis PG, Skarshewski A, Vanwonterghem I, Hugenholtz P, Tyson GW. Angly FE, et al. Among authors: skarshewski a. Microbiome. 2014 Apr 7;2:11. doi: 10.1186/2049-2618-2-11. eCollection 2014. Microbiome. 2014. PMID: 24708850 Free PMC article.

7

Complex evolutionary relationships among four classes of modular RNA-binding splicing regulators in eukaryotes: the hnRNP, SR, ELAV-like and CELF proteins.

Tang YH, Han SP, Kassahn KS, Skarshewski A, Rothnagel JA, Smith R. Tang YH, et al. Among authors: skarshewski a. J Mol Evol. 2012 Dec;75(5-6):214-28. doi: 10.1007/s00239-012-9533-0. Epub 2012 Nov 24. J Mol Evol. 2012. PMID: 23179353

8

Near complete genome sequence of the animal feed probiotic, Bacillus amyloliquefaciens H57.

Schofield BJ, Skarshewski A, Lachner N, Ouwerkerk D, Klieve AV, Dart P, Hugenholtz P. Schofield BJ, et al. Among authors: skarshewski a. Stand Genomic Sci. 2016 Sep 6;11(1):60. doi: 10.1186/s40793-016-0189-z. eCollection 2016. Stand Genomic Sci. 2016. PMID: 27602182 Free PMC article.

9

uPEPperoni: an online tool for upstream open reading frame location and analysis of transcript conservation.

Skarshewski A, Stanton-Cook M, Huber T, Al Mansoori S, Smith R, Beatson SA, Rothnagel JA. Skarshewski A, et al. BMC Bioinformatics. 2014 Feb 1;15:36. doi: 10.1186/1471-2105-15-36. BMC Bioinformatics. 2014. PMID: 24484385 Free PMC article.

10

Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation.

Berkman PJ, Skarshewski A, Manoli S, Lorenc MT, Stiller J, Smits L, Lai K, Campbell E, Kubaláková M, Simková H, Batley J, Doležel J, Hernandez P, Edwards D. Berkman PJ, et al. Among authors: skarshewski a. Theor Appl Genet. 2012 Feb;124(3):423-32. doi: 10.1007/s00122-011-1717-2. Epub 2011 Oct 15. Theor Appl Genet. 2012. PMID: 22001910

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