Skjærven L - Search Results

1

Investigating Protein Sequence-structure-dynamics Relationships with Bio3D-web.

Jariwala S, Skjærven L, Yao XQ, Grant BJ. Jariwala S, et al. Among authors: skjaerven l. J Vis Exp. 2017 Jul 16;(125):55640. doi: 10.3791/55640. J Vis Exp. 2017. PMID: 28745621 Free PMC article.

2

Integrating protein structural dynamics and evolutionary analysis with Bio3D.

Skjærven L, Yao XQ, Scarabelli G, Grant BJ. Skjærven L, et al. BMC Bioinformatics. 2014 Dec 10;15(1):399. doi: 10.1186/s12859-014-0399-6. BMC Bioinformatics. 2014. PMID: 25491031 Free PMC article.

3

Online interactive analysis of protein structure ensembles with Bio3D-web.

Skjærven L, Jariwala S, Yao XQ, Grant BJ. Skjærven L, et al. Bioinformatics. 2016 Nov 15;32(22):3510-3512. doi: 10.1093/bioinformatics/btw482. Epub 2016 Jul 16. Bioinformatics. 2016. PMID: 27423893 Free PMC article.

4

Comparative Protein Structure Analysis with Bio3D-Web.

Grant BJ, Skjærven L, Yao XQ. Grant BJ, et al. Among authors: skjaerven l. Methods Mol Biol. 2020;2112:15-28. doi: 10.1007/978-1-0716-0270-6_2. Methods Mol Biol. 2020. PMID: 32006275

5

Dynamic Coupling and Allosteric Networks in the α Subunit of Heterotrimeric G Proteins.

Yao XQ, Malik RU, Griggs NW, Skjærven L, Traynor JR, Sivaramakrishnan S, Grant BJ. Yao XQ, et al. Among authors: skjaerven l. J Biol Chem. 2016 Feb 26;291(9):4742-53. doi: 10.1074/jbc.M115.702605. Epub 2015 Dec 24. J Biol Chem. 2016. PMID: 26703464 Free PMC article.

6

Rapid Characterization of Allosteric Networks with Ensemble Normal Mode Analysis.

Yao XQ, Skjærven L, Grant BJ. Yao XQ, et al. Among authors: skjaerven l. J Phys Chem B. 2016 Aug 25;120(33):8276-88. doi: 10.1021/acs.jpcb.6b01991. Epub 2016 Apr 20. J Phys Chem B. 2016. PMID: 27056373 Free PMC article.

7

The Bio3D packages for structural bioinformatics.

Grant BJ, Skjaerven L, Yao XQ. Grant BJ, et al. Among authors: skjaerven l. Protein Sci. 2021 Jan;30(1):20-30. doi: 10.1002/pro.3923. Epub 2020 Aug 17. Protein Sci. 2021. PMID: 32734663 Free PMC article.

8

Conformational sampling and nucleotide-dependent transitions of the GroEL subunit probed by unbiased molecular dynamics simulations.

Skjaerven L, Grant B, Muga A, Teigen K, McCammon JA, Reuter N, Martinez A. Skjaerven L, et al. PLoS Comput Biol. 2011 Mar;7(3):e1002004. doi: 10.1371/journal.pcbi.1002004. Epub 2011 Mar 10. PLoS Comput Biol. 2011. PMID: 21423709 Free PMC article.

9

WEBnm@ v2.0: Web server and services for comparing protein flexibility.

Tiwari SP, Fuglebakk E, Hollup SM, Skjærven L, Cragnolini T, Grindhaug SH, Tekle KM, Reuter N. Tiwari SP, et al. Among authors: skjaerven l. BMC Bioinformatics. 2014 Dec 30;15(1):427. doi: 10.1186/s12859-014-0427-6. BMC Bioinformatics. 2014. PMID: 25547242 Free PMC article.

10

The peripheral binding of 14-3-3γ to membranes involves isoform-specific histidine residues.

Bustad HJ, Skjaerven L, Ying M, Halskau Ø, Baumann A, Rodriguez-Larrea D, Costas M, Underhaug J, Sanchez-Ruiz JM, Martinez A. Bustad HJ, et al. Among authors: skjaerven l. PLoS One. 2012;7(11):e49671. doi: 10.1371/journal.pone.0049671. Epub 2012 Nov 26. PLoS One. 2012. PMID: 23189152 Free PMC article.

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