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The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources.
Arnaud MB, Cerqueira GC, Inglis DO, Skrzypek MS, Binkley J, Chibucos MC, Crabtree J, Howarth C, Orvis J, Shah P, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G, Wortman JR. Arnaud MB, et al. Among authors: skrzypek ms. Nucleic Acids Res. 2012 Jan;40(Database issue):D653-9. doi: 10.1093/nar/gkr875. Epub 2011 Nov 12. Nucleic Acids Res. 2012. PMID: 22080559 Free PMC article.
Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD).
Balakrishnan R, Christie KR, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hong EL, Nash R, Oughtred R, Skrzypek M, Theesfeld CL, Binkley G, Dong Q, Lane C, Sethuraman A, Weng S, Botstein D, Cherry JM. Balakrishnan R, et al. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D374-7. doi: 10.1093/nar/gki023. Nucleic Acids Res. 2005. PMID: 15608219 Free PMC article.
Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome.
Hirschman JE, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hong EL, Livstone MS, Nash R, Park J, Oughtred R, Skrzypek M, Starr B, Theesfeld CL, Williams J, Andrada R, Binkley G, Dong Q, Lane C, Miyasato S, Sethuraman A, Schroeder M, Thanawala MK, Weng S, Dolinski K, Botstein D, Cherry JM. Hirschman JE, et al. Among authors: skrzypek m. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D442-5. doi: 10.1093/nar/gkj117. Nucleic Acids Res. 2006. PMID: 16381907 Free PMC article.
Sequence resources at the Candida Genome Database.
Arnaud MB, Costanzo MC, Skrzypek MS, Shah P, Binkley G, Lane C, Miyasato SR, Sherlock G. Arnaud MB, et al. Among authors: skrzypek ms. Nucleic Acids Res. 2007 Jan;35(Database issue):D452-6. doi: 10.1093/nar/gkl899. Epub 2006 Nov 7. Nucleic Acids Res. 2007. PMID: 17090582 Free PMC article.
Expanded protein information at SGD: new pages and proteome browser.
Nash R, Weng S, Hitz B, Balakrishnan R, Christie KR, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hong EL, Livstone MS, Oughtred R, Park J, Skrzypek M, Theesfeld CL, Binkley G, Dong Q, Lane C, Miyasato S, Sethuraman A, Schroeder M, Dolinski K, Botstein D, Cherry JM. Nash R, et al. Among authors: skrzypek m. Nucleic Acids Res. 2007 Jan;35(Database issue):D468-71. doi: 10.1093/nar/gkl931. Epub 2006 Nov 16. Nucleic Acids Res. 2007. PMID: 17142221 Free PMC article.
Gene Ontology annotations at SGD: new data sources and annotation methods.
Hong EL, Balakrishnan R, Dong Q, Christie KR, Park J, Binkley G, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hirschman JE, Hitz BC, Krieger CJ, Livstone MS, Miyasato SR, Nash RS, Oughtred R, Skrzypek MS, Weng S, Wong ED, Zhu KK, Dolinski K, Botstein D, Cherry JM. Hong EL, et al. Among authors: skrzypek ms. Nucleic Acids Res. 2008 Jan;36(Database issue):D577-81. doi: 10.1093/nar/gkm909. Epub 2007 Nov 3. Nucleic Acids Res. 2008. PMID: 17982175 Free PMC article.
Evolution of pathogenicity and sexual reproduction in eight Candida genomes.
Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, Munro CA, Rheinbay E, Grabherr M, Forche A, Reedy JL, Agrafioti I, Arnaud MB, Bates S, Brown AJ, Brunke S, Costanzo MC, Fitzpatrick DA, de Groot PW, Harris D, Hoyer LL, Hube B, Klis FM, Kodira C, Lennard N, Logue ME, Martin R, Neiman AM, Nikolaou E, Quail MA, Quinn J, Santos MC, Schmitzberger FF, Sherlock G, Shah P, Silverstein KA, Skrzypek MS, Soll D, Staggs R, Stansfield I, Stumpf MP, Sudbery PE, Srikantha T, Zeng Q, Berman J, Berriman M, Heitman J, Gow NA, Lorenz MC, Birren BW, Kellis M, Cuomo CA. Butler G, et al. Among authors: skrzypek ms. Nature. 2009 Jun 4;459(7247):657-62. doi: 10.1038/nature08064. Nature. 2009. PMID: 19465905 Free PMC article.
64 results