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41 results
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DNA methylation: roles in mammalian development.
Smith ZD, Meissner A. Smith ZD, et al. Nat Rev Genet. 2013 Mar;14(3):204-20. doi: 10.1038/nrg3354. Epub 2013 Feb 12. Nat Rev Genet. 2013. PMID: 23400093 Review.
High-resolution DNA-binding specificity analysis of yeast transcription factors.
Zhu C, Byers KJ, McCord RP, Shi Z, Berger MF, Newburger DE, Saulrieta K, Smith Z, Shah MV, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A, Murthy T, Labaer J, Bulyk ML. Zhu C, et al. Genome Res. 2009 Apr;19(4):556-66. doi: 10.1101/gr.090233.108. Epub 2009 Jan 21. Genome Res. 2009. PMID: 19158363 Free PMC article.
High-throughput bisulfite sequencing in mammalian genomes.
Smith ZD, Gu H, Bock C, Gnirke A, Meissner A. Smith ZD, et al. Methods. 2009 Jul;48(3):226-32. doi: 10.1016/j.ymeth.2009.05.003. Epub 2009 May 12. Methods. 2009. PMID: 19442738 Free PMC article.
Unbiased reconstruction of a mammalian transcriptional network mediating pathogen responses.
Amit I, Garber M, Chevrier N, Leite AP, Donner Y, Eisenhaure T, Guttman M, Grenier JK, Li W, Zuk O, Schubert LA, Birditt B, Shay T, Goren A, Zhang X, Smith Z, Deering R, McDonald RC, Cabili M, Bernstein BE, Rinn JL, Meissner A, Root DE, Hacohen N, Regev A. Amit I, et al. Science. 2009 Oct 9;326(5950):257-63. doi: 10.1126/science.1179050. Epub 2009 Sep 3. Science. 2009. PMID: 19729616 Free PMC article.
Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution.
Gu H, Bock C, Mikkelsen TS, Jäger N, Smith ZD, Tomazou E, Gnirke A, Lander ES, Meissner A. Gu H, et al. Among authors: smith zd. Nat Methods. 2010 Feb;7(2):133-6. doi: 10.1038/nmeth.1414. Epub 2010 Jan 10. Nat Methods. 2010. PMID: 20062050 Free PMC article.
Dynamic single-cell imaging of direct reprogramming reveals an early specifying event.
Smith ZD, Nachman I, Regev A, Meissner A. Smith ZD, et al. Nat Biotechnol. 2010 May;28(5):521-6. doi: 10.1038/nbt.1632. Epub 2010 May 2. Nat Biotechnol. 2010. PMID: 20436460 Free PMC article.
Reprogramming factor expression initiates widespread targeted chromatin remodeling.
Koche RP, Smith ZD, Adli M, Gu H, Ku M, Gnirke A, Bernstein BE, Meissner A. Koche RP, et al. Among authors: smith zd. Cell Stem Cell. 2011 Jan 7;8(1):96-105. doi: 10.1016/j.stem.2010.12.001. Cell Stem Cell. 2011. PMID: 21211784 Free PMC article.
Reference Maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines.
Bock C, Kiskinis E, Verstappen G, Gu H, Boulting G, Smith ZD, Ziller M, Croft GF, Amoroso MW, Oakley DH, Gnirke A, Eggan K, Meissner A. Bock C, et al. Among authors: smith zd. Cell. 2011 Feb 4;144(3):439-52. doi: 10.1016/j.cell.2010.12.032. Cell. 2011. PMID: 21295703 Free PMC article.
Preparation of reduced representation bisulfite sequencing libraries for genome-scale DNA methylation profiling.
Gu H, Smith ZD, Bock C, Boyle P, Gnirke A, Meissner A. Gu H, et al. Among authors: smith zd. Nat Protoc. 2011 Apr;6(4):468-81. doi: 10.1038/nprot.2010.190. Epub 2011 Mar 18. Nat Protoc. 2011. PMID: 21412275
Lung stem cell self-renewal relies on BMI1-dependent control of expression at imprinted loci.
Zacharek SJ, Fillmore CM, Lau AN, Gludish DW, Chou A, Ho JW, Zamponi R, Gazit R, Bock C, Jäger N, Smith ZD, Kim TM, Saunders AH, Wong J, Lee JH, Roach RR, Rossi DJ, Meissner A, Gimelbrant AA, Park PJ, Kim CF. Zacharek SJ, et al. Among authors: smith zd. Cell Stem Cell. 2011 Sep 2;9(3):272-81. doi: 10.1016/j.stem.2011.07.007. Cell Stem Cell. 2011. PMID: 21885022 Free PMC article.
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