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213 results
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Linear models and empirical bayes methods for assessing differential expression in microarray experiments.
Smyth GK. Smyth GK. Stat Appl Genet Mol Biol. 2004;3:Article3. doi: 10.2202/1544-6115.1027. Epub 2004 Feb 12. Stat Appl Genet Mol Biol. 2004. PMID: 16646809
Statistical issues in cDNA microarray data analysis.
Smyth GK, Yang YH, Speed T. Smyth GK, et al. Methods Mol Biol. 2003;224:111-36. doi: 10.1385/1-59259-364-X:111. Methods Mol Biol. 2003. PMID: 12710670 No abstract available.
Normalization of cDNA microarray data.
Smyth GK, Speed T. Smyth GK, et al. Methods. 2003 Dec;31(4):265-73. doi: 10.1016/s1046-2023(03)00155-5. Methods. 2003. PMID: 14597310
limmaGUI: a graphical user interface for linear modeling of microarray data.
Wettenhall JM, Smyth GK. Wettenhall JM, et al. Among authors: smyth gk. Bioinformatics. 2004 Dec 12;20(18):3705-6. doi: 10.1093/bioinformatics/bth449. Epub 2004 Aug 5. Bioinformatics. 2004. PMID: 15297296
Use of within-array replicate spots for assessing differential expression in microarray experiments.
Smyth GK, Michaud J, Scott HS. Smyth GK, et al. Bioinformatics. 2005 May 1;21(9):2067-75. doi: 10.1093/bioinformatics/bti270. Epub 2005 Jan 18. Bioinformatics. 2005. PMID: 15657102
affylmGUI: a graphical user interface for linear modeling of single channel microarray data.
Wettenhall JM, Simpson KM, Satterley K, Smyth GK. Wettenhall JM, et al. Among authors: smyth gk. Bioinformatics. 2006 Apr 1;22(7):897-9. doi: 10.1093/bioinformatics/btl025. Epub 2006 Feb 2. Bioinformatics. 2006. PMID: 16455752
Empirical array quality weights in the analysis of microarray data.
Ritchie ME, Diyagama D, Neilson J, van Laar R, Dobrovic A, Holloway A, Smyth GK. Ritchie ME, et al. Among authors: smyth gk. BMC Bioinformatics. 2006 May 19;7:261. doi: 10.1186/1471-2105-7-261. BMC Bioinformatics. 2006. PMID: 16712727 Free PMC article.
Normalization of boutique two-color microarrays with a high proportion of differentially expressed probes.
Oshlack A, Emslie D, Corcoran LM, Smyth GK. Oshlack A, et al. Among authors: smyth gk. Genome Biol. 2007;8(1):R2. doi: 10.1186/gb-2007-8-1-r2. Genome Biol. 2007. PMID: 17204140 Free PMC article.
Using DNA microarrays to study gene expression in closely related species.
Oshlack A, Chabot AE, Smyth GK, Gilad Y. Oshlack A, et al. Among authors: smyth gk. Bioinformatics. 2007 May 15;23(10):1235-42. doi: 10.1093/bioinformatics/btm111. Epub 2007 Mar 23. Bioinformatics. 2007. PMID: 17384014
Small-sample estimation of negative binomial dispersion, with applications to SAGE data.
Robinson MD, Smyth GK. Robinson MD, et al. Among authors: smyth gk. Biostatistics. 2008 Apr;9(2):321-32. doi: 10.1093/biostatistics/kxm030. Epub 2007 Aug 29. Biostatistics. 2008. PMID: 17728317
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