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212 results
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Testing significance relative to a fold-change threshold is a TREAT.
McCarthy DJ, Smyth GK. McCarthy DJ, et al. Among authors: smyth gk. Bioinformatics. 2009 Mar 15;25(6):765-71. doi: 10.1093/bioinformatics/btp053. Epub 2009 Jan 28. Bioinformatics. 2009. PMID: 19176553 Free PMC article.
Statistical issues in cDNA microarray data analysis.
Smyth GK, Yang YH, Speed T. Smyth GK, et al. Methods Mol Biol. 2003;224:111-36. doi: 10.1385/1-59259-364-X:111. Methods Mol Biol. 2003. PMID: 12710670 No abstract available.
Normalization of cDNA microarray data.
Smyth GK, Speed T. Smyth GK, et al. Methods. 2003 Dec;31(4):265-73. doi: 10.1016/s1046-2023(03)00155-5. Methods. 2003. PMID: 14597310
Statistical modeling of sequencing errors in SAGE libraries.
Beissbarth T, Hyde L, Smyth GK, Job C, Boon WM, Tan SS, Scott HS, Speed TP. Beissbarth T, et al. Among authors: smyth gk. Bioinformatics. 2004 Aug 4;20 Suppl 1:i31-9. doi: 10.1093/bioinformatics/bth924. Bioinformatics. 2004. PMID: 15262778
limmaGUI: a graphical user interface for linear modeling of microarray data.
Wettenhall JM, Smyth GK. Wettenhall JM, et al. Among authors: smyth gk. Bioinformatics. 2004 Dec 12;20(18):3705-6. doi: 10.1093/bioinformatics/bth449. Epub 2004 Aug 5. Bioinformatics. 2004. PMID: 15297296
Use of within-array replicate spots for assessing differential expression in microarray experiments.
Smyth GK, Michaud J, Scott HS. Smyth GK, et al. Bioinformatics. 2005 May 1;21(9):2067-75. doi: 10.1093/bioinformatics/bti270. Epub 2005 Jan 18. Bioinformatics. 2005. PMID: 15657102
A systematic approach for comprehensive T-cell epitope discovery using peptide libraries.
Beissbarth T, Tye-Din JA, Smyth GK, Speed TP, Anderson RP. Beissbarth T, et al. Among authors: smyth gk. Bioinformatics. 2005 Jun;21 Suppl 1:i29-37. doi: 10.1093/bioinformatics/bti1013. Bioinformatics. 2005. PMID: 15961469
affylmGUI: a graphical user interface for linear modeling of single channel microarray data.
Wettenhall JM, Simpson KM, Satterley K, Smyth GK. Wettenhall JM, et al. Among authors: smyth gk. Bioinformatics. 2006 Apr 1;22(7):897-9. doi: 10.1093/bioinformatics/btl025. Epub 2006 Feb 2. Bioinformatics. 2006. PMID: 16455752
Linear models and empirical bayes methods for assessing differential expression in microarray experiments.
Smyth GK. Smyth GK. Stat Appl Genet Mol Biol. 2004;3:Article3. doi: 10.2202/1544-6115.1027. Epub 2004 Feb 12. Stat Appl Genet Mol Biol. 2004. PMID: 16646809
Empirical array quality weights in the analysis of microarray data.
Ritchie ME, Diyagama D, Neilson J, van Laar R, Dobrovic A, Holloway A, Smyth GK. Ritchie ME, et al. Among authors: smyth gk. BMC Bioinformatics. 2006 May 19;7:261. doi: 10.1186/1471-2105-7-261. BMC Bioinformatics. 2006. PMID: 16712727 Free PMC article.
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