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212 results
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featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.
Liao Y, Smyth GK, Shi W. Liao Y, et al. Among authors: smyth gk. Bioinformatics. 2014 Apr 1;30(7):923-30. doi: 10.1093/bioinformatics/btt656. Epub 2013 Nov 13. Bioinformatics. 2014. PMID: 24227677
Normalization of cDNA microarray data.
Smyth GK, Speed T. Smyth GK, et al. Methods. 2003 Dec;31(4):265-73. doi: 10.1016/s1046-2023(03)00155-5. Methods. 2003. PMID: 14597310
Statistical modeling of sequencing errors in SAGE libraries.
Beissbarth T, Hyde L, Smyth GK, Job C, Boon WM, Tan SS, Scott HS, Speed TP. Beissbarth T, et al. Among authors: smyth gk. Bioinformatics. 2004 Aug 4;20 Suppl 1:i31-9. doi: 10.1093/bioinformatics/bth924. Bioinformatics. 2004. PMID: 15262778
limmaGUI: a graphical user interface for linear modeling of microarray data.
Wettenhall JM, Smyth GK. Wettenhall JM, et al. Among authors: smyth gk. Bioinformatics. 2004 Dec 12;20(18):3705-6. doi: 10.1093/bioinformatics/bth449. Epub 2004 Aug 5. Bioinformatics. 2004. PMID: 15297296
Use of within-array replicate spots for assessing differential expression in microarray experiments.
Smyth GK, Michaud J, Scott HS. Smyth GK, et al. Bioinformatics. 2005 May 1;21(9):2067-75. doi: 10.1093/bioinformatics/bti270. Epub 2005 Jan 18. Bioinformatics. 2005. PMID: 15657102
A systematic approach for comprehensive T-cell epitope discovery using peptide libraries.
Beissbarth T, Tye-Din JA, Smyth GK, Speed TP, Anderson RP. Beissbarth T, et al. Among authors: smyth gk. Bioinformatics. 2005 Jun;21 Suppl 1:i29-37. doi: 10.1093/bioinformatics/bti1013. Bioinformatics. 2005. PMID: 15961469
affylmGUI: a graphical user interface for linear modeling of single channel microarray data.
Wettenhall JM, Simpson KM, Satterley K, Smyth GK. Wettenhall JM, et al. Among authors: smyth gk. Bioinformatics. 2006 Apr 1;22(7):897-9. doi: 10.1093/bioinformatics/btl025. Epub 2006 Feb 2. Bioinformatics. 2006. PMID: 16455752
Empirical array quality weights in the analysis of microarray data.
Ritchie ME, Diyagama D, Neilson J, van Laar R, Dobrovic A, Holloway A, Smyth GK. Ritchie ME, et al. Among authors: smyth gk. BMC Bioinformatics. 2006 May 19;7:261. doi: 10.1186/1471-2105-7-261. BMC Bioinformatics. 2006. PMID: 16712727 Free PMC article.
Proximal genomic localization of STAT1 binding and regulated transcriptional activity.
Wormald S, Hilton DJ, Smyth GK, Speed TP. Wormald S, et al. Among authors: smyth gk. BMC Genomics. 2006 Oct 11;7:254. doi: 10.1186/1471-2164-7-254. BMC Genomics. 2006. PMID: 17032459 Free PMC article.
Using DNA microarrays to study gene expression in closely related species.
Oshlack A, Chabot AE, Smyth GK, Gilad Y. Oshlack A, et al. Among authors: smyth gk. Bioinformatics. 2007 May 15;23(10):1235-42. doi: 10.1093/bioinformatics/btm111. Epub 2007 Mar 23. Bioinformatics. 2007. PMID: 17384014
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