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Characterization of the immunophenotypes and antigenomes of colorectal cancers reveals distinct tumor escape mechanisms and novel targets for immunotherapy.
Angelova M, Charoentong P, Hackl H, Fischer ML, Snajder R, Krogsdam AM, Waldner MJ, Bindea G, Mlecnik B, Galon J, Trajanoski Z. Angelova M, et al. Among authors: snajder r. Genome Biol. 2015 Mar 31;16(1):64. doi: 10.1186/s13059-015-0620-6. Genome Biol. 2015. PMID: 25853550 Free PMC article.
MEMOSys 2.0: an update of the bioinformatics database for genome-scale models and genomic data.
Pabinger S, Snajder R, Hardiman T, Willi M, Dander A, Trajanoski Z. Pabinger S, et al. Among authors: snajder r. Database (Oxford). 2014 Feb 14;2014:bau004. doi: 10.1093/database/bau004. Print 2014. Database (Oxford). 2014. PMID: 24532766 Free PMC article.
High-Troughput Characterization and Comparison of Microbial Communities.
Halwachs B, Höftberger J, Stocker G, Snajder R, Gorkiewicz G, Thallinger GG. Halwachs B, et al. Among authors: snajder r. Biomed Tech (Berl). 2013 Aug;58 Suppl 1:/j/bmte.2013.58.issue-s1-M/bmt-2013-4312/bmt-2013-4312.xml. doi: 10.1515/bmt-2013-4312. Epub 2013 Sep 7. Biomed Tech (Berl). 2013. PMID: 24042957 No abstract available.
GPViz: dynamic visualization of genomic regions and variants affecting protein domains.
Snajder R, Trajanoski Z, Hackl H. Snajder R, et al. Bioinformatics. 2013 Sep 1;29(17):2195-6. doi: 10.1093/bioinformatics/btt354. Epub 2013 Jun 19. Bioinformatics. 2013. PMID: 23782613
A survey of tools for variant analysis of next-generation genome sequencing data.
Pabinger S, Dander A, Fischer M, Snajder R, Sperk M, Efremova M, Krabichler B, Speicher MR, Zschocke J, Trajanoski Z. Pabinger S, et al. Among authors: snajder r. Brief Bioinform. 2014 Mar;15(2):256-78. doi: 10.1093/bib/bbs086. Epub 2013 Jan 21. Brief Bioinform. 2014. PMID: 23341494 Free PMC article.
SIMPLEX: cloud-enabled pipeline for the comprehensive analysis of exome sequencing data.
Fischer M, Snajder R, Pabinger S, Dander A, Schossig A, Zschocke J, Trajanoski Z, Stocker G. Fischer M, et al. Among authors: snajder r. PLoS One. 2012;7(8):e41948. doi: 10.1371/journal.pone.0041948. Epub 2012 Aug 1. PLoS One. 2012. PMID: 22870267 Free PMC article.
Functional categories associated with clusters of genes that are co-expressed across the NCI-60 cancer cell lines.
Zeeberg BR, Reinhold W, Snajder R, Thallinger GG, Weinstein JN, Kohn KW, Pommier Y. Zeeberg BR, et al. Among authors: snajder r. PLoS One. 2012;7(1):e30317. doi: 10.1371/journal.pone.0030317. Epub 2012 Jan 24. PLoS One. 2012. PMID: 22291933 Free PMC article.
QPCR: Application for real-time PCR data management and analysis.
Pabinger S, Thallinger GG, Snajder R, Eichhorn H, Rader R, Trajanoski Z. Pabinger S, et al. Among authors: snajder r. BMC Bioinformatics. 2009 Aug 27;10:268. doi: 10.1186/1471-2105-10-268. BMC Bioinformatics. 2009. PMID: 19712446 Free PMC article.