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Impacts of variation in the human genome on gene regulation.
Haraksingh RR, Snyder MP. Haraksingh RR, et al. Among authors: snyder mp. J Mol Biol. 2013 Nov 1;425(21):3970-7. doi: 10.1016/j.jmb.2013.07.015. Epub 2013 Jul 16. J Mol Biol. 2013. PMID: 23871684 Free article. Review.
Mapping copy number variation by population-scale genome sequencing.
Mills RE, Walter K, Stewart C, Handsaker RE, Chen K, Alkan C, Abyzov A, Yoon SC, Ye K, Cheetham RK, Chinwalla A, Conrad DF, Fu Y, Grubert F, Hajirasouliha I, Hormozdiari F, Iakoucheva LM, Iqbal Z, Kang S, Kidd JM, Konkel MK, Korn J, Khurana E, Kural D, Lam HY, Leng J, Li R, Li Y, Lin CY, Luo R, Mu XJ, Nemesh J, Peckham HE, Rausch T, Scally A, Shi X, Stromberg MP, Stütz AM, Urban AE, Walker JA, Wu J, Zhang Y, Zhang ZD, Batzer MA, Ding L, Marth GT, McVean G, Sebat J, Snyder M, Wang J, Ye K, Eichler EE, Gerstein MB, Hurles ME, Lee C, McCarroll SA, Korbel JO; 1000 Genomes Project. Mills RE, et al. Among authors: snyder m. Nature. 2011 Feb 3;470(7332):59-65. doi: 10.1038/nature09708. Nature. 2011. PMID: 21293372 Free PMC article.
The variant call format and VCFtools.
Danecek P, Auton A, Abecasis G, Albers CA, Banks E, DePristo MA, Handsaker RE, Lunter G, Marth GT, Sherry ST, McVean G, Durbin R; 1000 Genomes Project Analysis Group. Danecek P, et al. Bioinformatics. 2011 Aug 1;27(15):2156-8. doi: 10.1093/bioinformatics/btr330. Epub 2011 Jun 7. Bioinformatics. 2011. PMID: 21653522 Free PMC article.
High-throughput sequencing for biology and medicine.
Soon WW, Hariharan M, Snyder MP. Soon WW, et al. Among authors: snyder mp. Mol Syst Biol. 2013;9:640. doi: 10.1038/msb.2012.61. Mol Syst Biol. 2013. PMID: 23340846 Free PMC article. Review.
Extensive genetic variation in somatic human tissues.
O'Huallachain M, Karczewski KJ, Weissman SM, Urban AE, Snyder MP. O'Huallachain M, et al. Among authors: snyder mp. Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):18018-23. doi: 10.1073/pnas.1213736109. Epub 2012 Oct 5. Proc Natl Acad Sci U S A. 2012. PMID: 23043118 Free PMC article.
High-throughput sequencing technologies.
Reuter JA, Spacek DV, Snyder MP. Reuter JA, et al. Among authors: snyder mp. Mol Cell. 2015 May 21;58(4):586-97. doi: 10.1016/j.molcel.2015.05.004. Mol Cell. 2015. PMID: 26000844 Free PMC article. Review.
Perspectives on ENCODE.
ENCODE Project Consortium; Snyder MP, Gingeras TR, Moore JE, Weng Z, Gerstein MB, Ren B, Hardison RC, Stamatoyannopoulos JA, Graveley BR, Feingold EA, Pazin MJ, Pagan M, Gilchrist DA, Hitz BC, Cherry JM, Bernstein BE, Mendenhall EM, Zerbino DR, Frankish A, Flicek P, Myers RM. ENCODE Project Consortium, et al. Among authors: snyder mp. Nature. 2020 Jul;583(7818):693-698. doi: 10.1038/s41586-020-2449-8. Epub 2020 Jul 29. Nature. 2020. PMID: 32728248 Free PMC article.
326 results