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Rational design of macrolides by virtual screening of combinatorial libraries generated through in silico manipulation of polyketide synthases.
Zotchev SB, Stepanchikova AV, Sergeyko AP, Sobolev BN, Filimonov DA, Poroikov VV. Zotchev SB, et al. Among authors: sobolev bn. J Med Chem. 2006 Mar 23;49(6):2077-87. doi: 10.1021/jm051035i. J Med Chem. 2006. PMID: 16539396
[Computer-aided design of polyketides with the required properties].
Sergeĭko AP, Stepanchikova AV, Sobolev BN, Zotchev SB, Lagunin AA, Filimonov DA, Poroĭkov VV. Sergeĭko AP, et al. Among authors: sobolev bn. Biomed Khim. 2007 Sep-Oct;53(5):522-31. Biomed Khim. 2007. PMID: 18078066 Russian.
[Computer-based substrate specifity prediction for cytochrome P450].
Veselovskiĭ AV, Sobolev BN, Zharkova MS, Archakov AI. Veselovskiĭ AV, et al. Among authors: sobolev bn. Biomed Khim. 2010 Jan-Feb;56(1):90-100. doi: 10.18097/pbmc20105601090. Biomed Khim. 2010. PMID: 21328914 Russian.
[Computer-assisted vaccine design].
Sobolev BN, Poroĭkov VV, Olenina LV, Kolesanova EF, Archakov AI. Sobolev BN, et al. Biomed Khim. 2003 Jul-Aug;49(4):309-32. Biomed Khim. 2003. PMID: 14562679 Review. Russian.
[Antigenicity and B-epitope mapping of hepatitis C virus envelope protein E2].
Kuz'mina TI, Olenina LV, Sanzhakov MA, Farafonova TE, Abramikhina TV, Dubuisson J, Sobolev BN, Kolesanova EF. Kuz'mina TI, et al. Among authors: sobolev bn. Biomed Khim. 2009 Jan-Feb;55(1):32-40. Biomed Khim. 2009. PMID: 19351031 Russian.
Spatial features of proteins related to their phosphorylation and associated structural changes.
Karasev DA, Veselova DA, Veselovsky AV, Sobolev BN, Zgoda VG, Archakov AI. Karasev DA, et al. Among authors: sobolev bn. Proteins. 2018 Jan;86(1):13-20. doi: 10.1002/prot.25397. Epub 2017 Oct 17. Proteins. 2018. PMID: 28986918
Prediction of amino acid residues participated in substrate recognition by cytochrome P450 subfamilies with broad substrate specificity.
Zharkova MS, Sobolev BN, Yu Oparina N, Veselovsky AV, Archakov AI. Zharkova MS, et al. Among authors: sobolev bn. J Mol Recognit. 2013 Feb;26(2):86-91. doi: 10.1002/jmr.2251. J Mol Recognit. 2013. PMID: 23334916
Prediction of amino acid positions specific for functional groups in a protein family based on local sequence similarity.
Karasev DA, Veselovsky AV, Oparina NY, Filimonov DA, Sobolev BN. Karasev DA, et al. Among authors: sobolev bn. J Mol Recognit. 2016 Apr;29(4):159-69. doi: 10.1002/jmr.2515. Epub 2015 Nov 8. J Mol Recognit. 2016. PMID: 26549790
Functional classification of proteins based on projection of amino acid sequences: application for prediction of protein kinase substrates.
Sobolev B, Filimonov D, Lagunin A, Zakharov A, Koborova O, Kel A, Poroikov V. Sobolev B, et al. BMC Bioinformatics. 2010 Jun 10;11:313. doi: 10.1186/1471-2105-11-313. BMC Bioinformatics. 2010. PMID: 20537135 Free PMC article.
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