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PIML: the Pathogen Information Markup Language.
He Y, Vines RR, Wattam AR, Abramochkin GV, Dickerman AW, Eckart JD, Sobral BW. He Y, et al. Among authors: sobral bw. Bioinformatics. 2005 Jan 1;21(1):116-21. doi: 10.1093/bioinformatics/bth462. Epub 2004 Aug 5. Bioinformatics. 2005. PMID: 15297293
An emerging cyberinfrastructure for biodefense pathogen and pathogen-host data.
Zhang C, Crasta O, Cammer S, Will R, Kenyon R, Sullivan D, Yu Q, Sun W, Jha R, Liu D, Xue T, Zhang Y, Moore M, McGarvey P, Huang H, Chen Y, Zhang J, Mazumder R, Wu C, Sobral B. Zhang C, et al. Nucleic Acids Res. 2008 Jan;36(Database issue):D884-91. doi: 10.1093/nar/gkm903. Epub 2007 Nov 4. Nucleic Acids Res. 2008. PMID: 17984082 Free PMC article.
PATRIC: the VBI PathoSystems Resource Integration Center.
Snyder EE, Kampanya N, Lu J, Nordberg EK, Karur HR, Shukla M, Soneja J, Tian Y, Xue T, Yoo H, Zhang F, Dharmanolla C, Dongre NV, Gillespie JJ, Hamelius J, Hance M, Huntington KI, Jukneliene D, Koziski J, Mackasmiel L, Mane SP, Nguyen V, Purkayastha A, Shallom J, Yu G, Guo Y, Gabbard J, Hix D, Azad AF, Baker SC, Boyle SM, Khudyakov Y, Meng XJ, Rupprecht C, Vinje J, Crasta OR, Czar MJ, Dickerman A, Eckart JD, Kenyon R, Will R, Setubal JC, Sobral BW. Snyder EE, et al. Among authors: sobral bw. Nucleic Acids Res. 2007 Jan;35(Database issue):D401-6. doi: 10.1093/nar/gkl858. Epub 2006 Nov 16. Nucleic Acids Res. 2007. PMID: 17142235 Free PMC article.
RNA-Rocket: an RNA-Seq analysis resource for infectious disease research.
Warren AS, Aurrecoechea C, Brunk B, Desai P, Emrich S, Giraldo-Calderón GI, Harb O, Hix D, Lawson D, Machi D, Mao C, McClelland M, Nordberg E, Shukla M, Vosshall LB, Wattam AR, Will R, Yoo HS, Sobral B. Warren AS, et al. Bioinformatics. 2015 May 1;31(9):1496-8. doi: 10.1093/bioinformatics/btv002. Epub 2015 Jan 7. Bioinformatics. 2015. PMID: 25573919 Free PMC article.
PIG--the pathogen interaction gateway.
Driscoll T, Dyer MD, Murali TM, Sobral BW. Driscoll T, et al. Among authors: sobral bw. Nucleic Acids Res. 2009 Jan;37(Database issue):D647-50. doi: 10.1093/nar/gkn799. Epub 2008 Nov 4. Nucleic Acids Res. 2009. PMID: 18984614 Free PMC article.
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