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Evolution of protein domain architectures.
Forslund K, Sonnhammer EL. Forslund K, et al. Methods Mol Biol. 2012;856:187-216. doi: 10.1007/978-1-61779-585-5_8. Methods Mol Biol. 2012. PMID: 22399460 Review.
Hieranoid: hierarchical orthology inference.
Schreiber F, Sonnhammer ELL. Schreiber F, et al. J Mol Biol. 2013 Jun 12;425(11):2072-2081. doi: 10.1016/j.jmb.2013.02.018. Epub 2013 Feb 26. J Mol Biol. 2013. PMID: 23485417
A combined transmembrane topology and signal peptide prediction method.
Käll L, Krogh A, Sonnhammer EL. Käll L, et al. J Mol Biol. 2004 May 14;338(5):1027-36. doi: 10.1016/j.jmb.2004.03.016. J Mol Biol. 2004. PMID: 15111065
Reliability of transmembrane predictions in whole-genome data.
Käll L, Sonnhammer EL. Käll L, et al. FEBS Lett. 2002 Dec 18;532(3):415-8. doi: 10.1016/s0014-5793(02)03730-4. FEBS Lett. 2002. PMID: 12482603
MetaTM - a consensus method for transmembrane protein topology prediction.
Klammer M, Messina DN, Schmitt T, Sonnhammer EL. Klammer M, et al. BMC Bioinformatics. 2009 Sep 28;10:314. doi: 10.1186/1471-2105-10-314. BMC Bioinformatics. 2009. PMID: 19785723 Free PMC article.
Domain tree-based analysis of protein architecture evolution.
Forslund K, Henricson A, Hollich V, Sonnhammer EL. Forslund K, et al. Mol Biol Evol. 2008 Feb;25(2):254-64. doi: 10.1093/molbev/msm254. Epub 2007 Nov 19. Mol Biol Evol. 2008. PMID: 18025066
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