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134 results
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Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment.
Lassmann T, Sonnhammer EL. Lassmann T, et al. Among authors: sonnhammer el. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W596-9. doi: 10.1093/nar/gkl191. Nucleic Acids Res. 2006. PMID: 16845078 Free PMC article.
A novel method for crosstalk analysis of biological networks: improving accuracy of pathway annotation.
Ogris C, Guala D, Helleday T, Sonnhammer EL. Ogris C, et al. Among authors: sonnhammer el. Nucleic Acids Res. 2017 Jan 25;45(2):e8. doi: 10.1093/nar/gkw849. Epub 2016 Sep 22. Nucleic Acids Res. 2017. PMID: 27664219 Free PMC article.
MaxLink: network-based prioritization of genes tightly linked to a disease seed set.
Guala D, Sjölund E, Sonnhammer EL. Guala D, et al. Among authors: sonnhammer el. Bioinformatics. 2014 Sep 15;30(18):2689-90. doi: 10.1093/bioinformatics/btu344. Epub 2014 May 20. Bioinformatics. 2014. PMID: 24849579
jSquid: a Java applet for graphical on-line network exploration.
Klammer M, Roopra S, Sonnhammer EL. Klammer M, et al. Among authors: sonnhammer el. Bioinformatics. 2008 Jun 15;24(12):1467-8. doi: 10.1093/bioinformatics/btn213. Epub 2008 Apr 29. Bioinformatics. 2008. PMID: 18445606
PathwAX: a web server for network crosstalk based pathway annotation.
Ogris C, Helleday T, Sonnhammer EL. Ogris C, et al. Among authors: sonnhammer el. Nucleic Acids Res. 2016 Jul 8;44(W1):W105-9. doi: 10.1093/nar/gkw356. Epub 2016 May 5. Nucleic Acids Res. 2016. PMID: 27151197 Free PMC article.
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER.
Wistrand M, Sonnhammer EL. Wistrand M, et al. Among authors: sonnhammer el. BMC Bioinformatics. 2005 Apr 15;6:99. doi: 10.1186/1471-2105-6-99. BMC Bioinformatics. 2005. PMID: 15831105 Free PMC article.
Pfam: clans, web tools and services.
Finn RD, Mistry J, Schuster-Böckler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer EL, Bateman A. Finn RD, et al. Among authors: sonnhammer el. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D247-51. doi: 10.1093/nar/gkj149. Nucleic Acids Res. 2006. PMID: 16381856 Free PMC article.
Pfam: the protein families database.
Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K, Holm L, Mistry J, Sonnhammer EL, Tate J, Punta M. Finn RD, et al. Among authors: sonnhammer el. Nucleic Acids Res. 2014 Jan;42(Database issue):D222-30. doi: 10.1093/nar/gkt1223. Epub 2013 Nov 27. Nucleic Acids Res. 2014. PMID: 24288371 Free PMC article.
FunCoup 3.0: database of genome-wide functional coupling networks.
Schmitt T, Ogris C, Sonnhammer EL. Schmitt T, et al. Among authors: sonnhammer el. Nucleic Acids Res. 2014 Jan;42(Database issue):D380-8. doi: 10.1093/nar/gkt984. Epub 2013 Oct 31. Nucleic Acids Res. 2014. PMID: 24185702 Free PMC article.
The Pfam protein families database.
Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer EL, Eddy SR, Bateman A. Finn RD, et al. Among authors: sonnhammer el. Nucleic Acids Res. 2010 Jan;38(Database issue):D211-22. doi: 10.1093/nar/gkp985. Epub 2009 Nov 17. Nucleic Acids Res. 2010. PMID: 19920124 Free PMC article.
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