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134 results
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Statistical assessment of crosstalk enrichment between gene groups in biological networks.
McCormack T, Frings O, Alexeyenko A, Sonnhammer EL. McCormack T, et al. Among authors: sonnhammer el. PLoS One. 2013;8(1):e54945. doi: 10.1371/journal.pone.0054945. Epub 2013 Jan 23. PLoS One. 2013. PMID: 23372799 Free PMC article.
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons.
Remm M, Storm CE, Sonnhammer EL. Remm M, et al. Among authors: sonnhammer el. J Mol Biol. 2001 Dec 14;314(5):1041-52. doi: 10.1006/jmbi.2000.5197. J Mol Biol. 2001. PMID: 11743721
Automated ortholog inference from phylogenetic trees and calculation of orthology reliability.
Storm CE, Sonnhammer EL. Storm CE, et al. Among authors: sonnhammer el. Bioinformatics. 2002 Jan;18(1):92-9. doi: 10.1093/bioinformatics/18.1.92. Bioinformatics. 2002. PMID: 11836216
Quality assessment of multiple alignment programs.
Lassmann T, Sonnhammer EL. Lassmann T, et al. Among authors: sonnhammer el. FEBS Lett. 2002 Oct 2;529(1):126-30. doi: 10.1016/s0014-5793(02)03189-7. FEBS Lett. 2002. PMID: 12354624
Reliability of transmembrane predictions in whole-genome data.
Käll L, Sonnhammer EL. Käll L, et al. Among authors: sonnhammer el. FEBS Lett. 2002 Dec 18;532(3):415-8. doi: 10.1016/s0014-5793(02)03730-4. FEBS Lett. 2002. PMID: 12482603
Computational antisense oligo prediction with a neural network model.
Chalk AM, Sonnhammer EL. Chalk AM, et al. Among authors: sonnhammer el. Bioinformatics. 2002 Dec;18(12):1567-75. doi: 10.1093/bioinformatics/18.12.1567. Bioinformatics. 2002. PMID: 12490440
transition priors for protein hidden Markov models: an empirical study towards maximum discrimination.
Wistrand M, Sonnhammer EL. Wistrand M, et al. Among authors: sonnhammer el. J Comput Biol. 2004;11(1):181-93. doi: 10.1089/106652704773416957. J Comput Biol. 2004. PMID: 15072695
Sfixem--graphical sequence feature display in Java.
Chalk AM, Wennerberg M, Sonnhammer EL. Chalk AM, et al. Among authors: sonnhammer el. Bioinformatics. 2004 Oct 12;20(15):2488-90. doi: 10.1093/bioinformatics/bth265. Epub 2004 Apr 15. Bioinformatics. 2004. PMID: 15087316
FunShift: a database of function shift analysis on protein subfamilies.
Abhiman S, Sonnhammer EL. Abhiman S, et al. Among authors: sonnhammer el. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D197-200. doi: 10.1093/nar/gki067. Nucleic Acids Res. 2005. PMID: 15608176 Free PMC article.
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER.
Wistrand M, Sonnhammer EL. Wistrand M, et al. Among authors: sonnhammer el. BMC Bioinformatics. 2005 Apr 15;6:99. doi: 10.1186/1471-2105-6-99. BMC Bioinformatics. 2005. PMID: 15831105 Free PMC article.
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