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Pfam: a comprehensive database of protein domain families based on seed alignments.
Sonnhammer EL, Eddy SR, Durbin R. Sonnhammer EL, et al. Proteins. 1997 Jul;28(3):405-20. doi: 10.1002/(sici)1097-0134(199707)28:3<405::aid-prot10>3.0.co;2-l. Proteins. 1997. PMID: 9223186
A workbench for large-scale sequence homology analysis.
Sonnhammer EL, Durbin R. Sonnhammer EL, et al. Comput Appl Biosci. 1994 Jun;10(3):301-7. doi: 10.1093/bioinformatics/10.3.301. Comput Appl Biosci. 1994. PMID: 7922687
The Pfam protein families database in 2019.
El-Gebali S, Mistry J, Bateman A, Eddy SR, Luciani A, Potter SC, Qureshi M, Richardson LJ, Salazar GA, Smart A, Sonnhammer ELL, Hirsh L, Paladin L, Piovesan D, Tosatto SCE, Finn RD. El-Gebali S, et al. Among authors: sonnhammer ell. Nucleic Acids Res. 2019 Jan 8;47(D1):D427-D432. doi: 10.1093/nar/gky995. Nucleic Acids Res. 2019. PMID: 30357350 Free PMC article.
Evolution of protein domain architectures.
Forslund K, Sonnhammer EL. Forslund K, et al. Among authors: sonnhammer el. Methods Mol Biol. 2012;856:187-216. doi: 10.1007/978-1-61779-585-5_8. Methods Mol Biol. 2012. PMID: 22399460 Review.
Domain architecture conservation in orthologs.
Forslund K, Pekkari I, Sonnhammer EL. Forslund K, et al. Among authors: sonnhammer el. BMC Bioinformatics. 2011 Aug 5;12:326. doi: 10.1186/1471-2105-12-326. BMC Bioinformatics. 2011. PMID: 21819573 Free PMC article.
Pfam: clans, web tools and services.
Finn RD, Mistry J, Schuster-Böckler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer EL, Bateman A. Finn RD, et al. Among authors: sonnhammer el. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D247-51. doi: 10.1093/nar/gkj149. Nucleic Acids Res. 2006. PMID: 16381856 Free PMC article.
The Pfam protein families database.
Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, Boursnell C, Pang N, Forslund K, Ceric G, Clements J, Heger A, Holm L, Sonnhammer EL, Eddy SR, Bateman A, Finn RD. Punta M, et al. Among authors: sonnhammer el. Nucleic Acids Res. 2012 Jan;40(Database issue):D290-301. doi: 10.1093/nar/gkr1065. Epub 2011 Nov 29. Nucleic Acids Res. 2012. PMID: 22127870 Free PMC article.
Pfam: the protein families database.
Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K, Holm L, Mistry J, Sonnhammer EL, Tate J, Punta M. Finn RD, et al. Among authors: sonnhammer el. Nucleic Acids Res. 2014 Jan;42(Database issue):D222-30. doi: 10.1093/nar/gkt1223. Epub 2013 Nov 27. Nucleic Acids Res. 2014. PMID: 24288371 Free PMC article.
The Pfam protein families database.
Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer EL, Eddy SR, Bateman A. Finn RD, et al. Among authors: sonnhammer el. Nucleic Acids Res. 2010 Jan;38(Database issue):D211-22. doi: 10.1093/nar/gkp985. Epub 2009 Nov 17. Nucleic Acids Res. 2010. PMID: 19920124 Free PMC article.
The Pfam protein families database.
Finn RD, Tate J, Mistry J, Coggill PC, Sammut SJ, Hotz HR, Ceric G, Forslund K, Eddy SR, Sonnhammer EL, Bateman A. Finn RD, et al. Among authors: sonnhammer el. Nucleic Acids Res. 2008 Jan;36(Database issue):D281-8. doi: 10.1093/nar/gkm960. Epub 2007 Nov 26. Nucleic Acids Res. 2008. PMID: 18039703 Free PMC article.
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