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134 results
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A hidden Markov model for predicting transmembrane helices in protein sequences.
Sonnhammer EL, von Heijne G, Krogh A. Sonnhammer EL, et al. Proc Int Conf Intell Syst Mol Biol. 1998;6:175-82. Proc Int Conf Intell Syst Mol Biol. 1998. PMID: 9783223
A general model of G protein-coupled receptor sequences and its application to detect remote homologs.
Wistrand M, Käll L, Sonnhammer EL. Wistrand M, et al. Among authors: sonnhammer el. Protein Sci. 2006 Mar;15(3):509-21. doi: 10.1110/ps.051745906. Epub 2006 Feb 1. Protein Sci. 2006. PMID: 16452613 Free PMC article.
A combined transmembrane topology and signal peptide prediction method.
Käll L, Krogh A, Sonnhammer EL. Käll L, et al. Among authors: sonnhammer el. J Mol Biol. 2004 May 14;338(5):1027-36. doi: 10.1016/j.jmb.2004.03.016. J Mol Biol. 2004. PMID: 15111065
transition priors for protein hidden Markov models: an empirical study towards maximum discrimination.
Wistrand M, Sonnhammer EL. Wistrand M, et al. Among authors: sonnhammer el. J Comput Biol. 2004;11(1):181-93. doi: 10.1089/106652704773416957. J Comput Biol. 2004. PMID: 15072695
MetaTM - a consensus method for transmembrane protein topology prediction.
Klammer M, Messina DN, Schmitt T, Sonnhammer EL. Klammer M, et al. Among authors: sonnhammer el. BMC Bioinformatics. 2009 Sep 28;10:314. doi: 10.1186/1471-2105-10-314. BMC Bioinformatics. 2009. PMID: 19785723 Free PMC article.
Predicting protein function from domain content.
Forslund K, Sonnhammer EL. Forslund K, et al. Among authors: sonnhammer el. Bioinformatics. 2008 Aug 1;24(15):1681-7. doi: 10.1093/bioinformatics/btn312. Epub 2008 Jun 30. Bioinformatics. 2008. PMID: 18591194
Improving profile HMM discrimination by adapting transition probabilities.
Wistrand M, Sonnhammer EL. Wistrand M, et al. Among authors: sonnhammer el. J Mol Biol. 2004 May 7;338(4):847-54. doi: 10.1016/j.jmb.2004.03.023. J Mol Biol. 2004. PMID: 15099750
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
Krogh A, Larsson B, von Heijne G, Sonnhammer EL. Krogh A, et al. Among authors: sonnhammer el. J Mol Biol. 2001 Jan 19;305(3):567-80. doi: 10.1006/jmbi.2000.4315. J Mol Biol. 2001. PMID: 11152613
An expert system for processing sequence homology data.
Sonnhammer EL, Durbin R. Sonnhammer EL, et al. Proc Int Conf Intell Syst Mol Biol. 1994;2:363-8. Proc Int Conf Intell Syst Mol Biol. 1994. PMID: 7584413
Volume changes in protein evolution.
Gerstein M, Sonnhammer EL, Chothia C. Gerstein M, et al. Among authors: sonnhammer el. J Mol Biol. 1994 Mar 4;236(4):1067-78. doi: 10.1016/0022-2836(94)90012-4. J Mol Biol. 1994. PMID: 8120887
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