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103 results
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A large-scale benchmark of gene prioritization methods.
Guala D, Sonnhammer ELL. Guala D, et al. Among authors: sonnhammer ell. Sci Rep. 2017 Apr 21;7:46598. doi: 10.1038/srep46598. Sci Rep. 2017. PMID: 28429739 Free PMC article.
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons.
Remm M, Storm CE, Sonnhammer EL. Remm M, et al. Among authors: sonnhammer el. J Mol Biol. 2001 Dec 14;314(5):1041-52. doi: 10.1006/jmbi.2000.5197. J Mol Biol. 2001. PMID: 11743721
Automated ortholog inference from phylogenetic trees and calculation of orthology reliability.
Storm CE, Sonnhammer EL. Storm CE, et al. Among authors: sonnhammer el. Bioinformatics. 2002 Jan;18(1):92-9. doi: 10.1093/bioinformatics/18.1.92. Bioinformatics. 2002. PMID: 11836216
Reliability of transmembrane predictions in whole-genome data.
Käll L, Sonnhammer EL. Käll L, et al. Among authors: sonnhammer el. FEBS Lett. 2002 Dec 18;532(3):415-8. doi: 10.1016/s0014-5793(02)03730-4. FEBS Lett. 2002. PMID: 12482603
transition priors for protein hidden Markov models: an empirical study towards maximum discrimination.
Wistrand M, Sonnhammer EL. Wistrand M, et al. Among authors: sonnhammer el. J Comput Biol. 2004;11(1):181-93. doi: 10.1089/106652704773416957. J Comput Biol. 2004. PMID: 15072695
Improved and automated prediction of effective siRNA.
Chalk AM, Wahlestedt C, Sonnhammer EL. Chalk AM, et al. Among authors: sonnhammer el. Biochem Biophys Res Commun. 2004 Jun 18;319(1):264-74. doi: 10.1016/j.bbrc.2004.04.181. Biochem Biophys Res Commun. 2004. PMID: 15158471
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER.
Wistrand M, Sonnhammer EL. Wistrand M, et al. Among authors: sonnhammer el. BMC Bioinformatics. 2005 Apr 15;6:99. doi: 10.1186/1471-2105-6-99. BMC Bioinformatics. 2005. PMID: 15831105 Free PMC article.
A novel transmembrane topology of presenilin based on reconciling experimental and computational evidence.
Henricson A, Käll L, Sonnhammer EL. Henricson A, et al. Among authors: sonnhammer el. FEBS J. 2005 Jun;272(11):2727-33. doi: 10.1111/j.1742-4658.2005.04691.x. FEBS J. 2005. PMID: 15943807
An HMM posterior decoder for sequence feature prediction that includes homology information.
Käll L, Krogh A, Sonnhammer EL. Käll L, et al. Among authors: sonnhammer el. Bioinformatics. 2005 Jun;21 Suppl 1:i251-7. doi: 10.1093/bioinformatics/bti1014. Bioinformatics. 2005. PMID: 15961464
Large-scale prediction of function shift in protein families with a focus on enzymatic function.
Abhiman S, Sonnhammer EL. Abhiman S, et al. Among authors: sonnhammer el. Proteins. 2005 Sep 1;60(4):758-68. doi: 10.1002/prot.20550. Proteins. 2005. PMID: 16001403
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