Sontag E - Search Results

1

Inferring dynamic architecture of cellular networks using time series of gene expression, protein and metabolite data.

Sontag E, Kiyatkin A, Kholodenko BN. Sontag E, et al. Bioinformatics. 2004 Aug 12;20(12):1877-86. doi: 10.1093/bioinformatics/bth173. Epub 2004 Mar 22. Bioinformatics. 2004. PMID: 15037511

2

Inference of signaling and gene regulatory networks by steady-state perturbation experiments: structure and accuracy.

Andrec M, Kholodenko BN, Levy RM, Sontag E. Andrec M, et al. Among authors: sontag e. J Theor Biol. 2005 Feb 7;232(3):427-41. doi: 10.1016/j.jtbi.2004.08.022. J Theor Biol. 2005. PMID: 15572066

3

Untangling the wires: a strategy to trace functional interactions in signaling and gene networks.

Kholodenko BN, Kiyatkin A, Bruggeman FJ, Sontag E, Westerhoff HV, Hoek JB. Kholodenko BN, et al. Among authors: sontag e. Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):12841-6. doi: 10.1073/pnas.192442699. Epub 2002 Sep 19. Proc Natl Acad Sci U S A. 2002. PMID: 12242336 Free PMC article.

4

Silence on the relevant literature and errors in implementation.

Bastiaens P, Birtwistle MR, Blüthgen N, Bruggeman FJ, Cho KH, Cosentino C, de la Fuente A, Hoek JB, Kiyatkin A, Klamt S, Kolch W, Legewie S, Mendes P, Naka T, Santra T, Sontag E, Westerhoff HV, Kholodenko BN. Bastiaens P, et al. Among authors: sontag e. Nat Biotechnol. 2015 Apr;33(4):336-9. doi: 10.1038/nbt.3185. Nat Biotechnol. 2015. PMID: 25850052 No abstract available.

5

NET-SYNTHESIS: a software for synthesis, inference and simplification of signal transduction networks.

Kachalo S, Zhang R, Sontag E, Albert R, DasGupta B. Kachalo S, et al. Among authors: sontag e. Bioinformatics. 2008 Jan 15;24(2):293-5. doi: 10.1093/bioinformatics/btm571. Epub 2007 Nov 22. Bioinformatics. 2008. PMID: 18033793

6

Robustness and fragility of Boolean models for genetic regulatory networks.

Chaves M, Albert R, Sontag ED. Chaves M, et al. J Theor Biol. 2005 Aug 7;235(3):431-49. doi: 10.1016/j.jtbi.2005.01.023. Epub 2005 Mar 19. J Theor Biol. 2005. PMID: 15882705

7

The effect of negative feedback loops on the dynamics of boolean networks.

Sontag E, Veliz-Cuba A, Laubenbacher R, Jarrah AS. Sontag E, et al. Biophys J. 2008 Jul;95(2):518-26. doi: 10.1529/biophysj.107.125021. Epub 2008 Mar 28. Biophys J. 2008. PMID: 18375509 Free PMC article.

8

Shape, size, and robustness: feasible regions in the parameter space of biochemical networks.

Dayarian A, Chaves M, Sontag ED, Sengupta AM. Dayarian A, et al. PLoS Comput Biol. 2009 Jan;5(1):e1000256. doi: 10.1371/journal.pcbi.1000256. Epub 2009 Jan 2. PLoS Comput Biol. 2009. PMID: 19119410 Free PMC article.

9

Discriminating direct and indirect connectivities in biological networks.

Kang T, Moore R, Li Y, Sontag E, Bleris L. Kang T, et al. Among authors: sontag e. Proc Natl Acad Sci U S A. 2015 Oct 13;112(41):12893-8. doi: 10.1073/pnas.1507168112. Epub 2015 Sep 29. Proc Natl Acad Sci U S A. 2015. PMID: 26420864 Free PMC article.

10

Remarks on feedforward circuits, adaptation, and pulse memory.

Sontag ED. Sontag ED. IET Syst Biol. 2010 Jan;4(1):39-51. doi: 10.1049/iet-syb.2008.0171. IET Syst Biol. 2010. PMID: 20001091 Free article.

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