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164 results
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Transcriptional control of human p53-regulated genes.
Riley T, Sontag E, Chen P, Levine A. Riley T, et al. Among authors: sontag e. Nat Rev Mol Cell Biol. 2008 May;9(5):402-12. doi: 10.1038/nrm2395. Nat Rev Mol Cell Biol. 2008. PMID: 18431400 Review.
The p53HMM algorithm: using profile hidden markov models to detect p53-responsive genes.
Riley T, Yu X, Sontag E, Levine A. Riley T, et al. Among authors: sontag e. BMC Bioinformatics. 2009 Apr 20;10:111. doi: 10.1186/1471-2105-10-111. BMC Bioinformatics. 2009. PMID: 19379484 Free PMC article.
Inference of signaling and gene regulatory networks by steady-state perturbation experiments: structure and accuracy.
Andrec M, Kholodenko BN, Levy RM, Sontag E. Andrec M, et al. Among authors: sontag e. J Theor Biol. 2005 Feb 7;232(3):427-41. doi: 10.1016/j.jtbi.2004.08.022. J Theor Biol. 2005. PMID: 15572066
The effect of negative feedback loops on the dynamics of boolean networks.
Sontag E, Veliz-Cuba A, Laubenbacher R, Jarrah AS. Sontag E, et al. Biophys J. 2008 Jul;95(2):518-26. doi: 10.1529/biophysj.107.125021. Epub 2008 Mar 28. Biophys J. 2008. PMID: 18375509 Free PMC article.
Modular cell biology: retroactivity and insulation.
Del Vecchio D, Ninfa AJ, Sontag ED. Del Vecchio D, et al. Mol Syst Biol. 2008;4:161. doi: 10.1038/msb4100204. Epub 2008 Feb 12. Mol Syst Biol. 2008. PMID: 18277378 Free PMC article.
Inferring dynamic architecture of cellular networks using time series of gene expression, protein and metabolite data.
Sontag E, Kiyatkin A, Kholodenko BN. Sontag E, et al. Bioinformatics. 2004 Aug 12;20(12):1877-86. doi: 10.1093/bioinformatics/bth173. Epub 2004 Mar 22. Bioinformatics. 2004. PMID: 15037511
Some new directions in control theory inspired by systems biology.
Sontag ED. Sontag ED. Syst Biol (Stevenage). 2004 Jun;1(1):9-18. doi: 10.1049/sb:20045006. Syst Biol (Stevenage). 2004. PMID: 17052111 Review.
Reverse engineering validation using a benchmark synthetic gene circuit in human cells.
Kang T, White JT, Xie Z, Benenson Y, Sontag E, Bleris L. Kang T, et al. Among authors: sontag e. ACS Synth Biol. 2013 May 17;2(5):255-62. doi: 10.1021/sb300093y. Epub 2013 Mar 28. ACS Synth Biol. 2013. PMID: 23654266 Free PMC article.
Untangling the wires: a strategy to trace functional interactions in signaling and gene networks.
Kholodenko BN, Kiyatkin A, Bruggeman FJ, Sontag E, Westerhoff HV, Hoek JB. Kholodenko BN, et al. Among authors: sontag e. Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):12841-6. doi: 10.1073/pnas.192442699. Epub 2002 Sep 19. Proc Natl Acad Sci U S A. 2002. PMID: 12242336 Free PMC article.
A novel method for signal transduction network inference from indirect experimental evidence.
Albert R, DasGupta B, Dondi R, Kachalo S, Sontag E, Zelikovsky A, Westbrooks K. Albert R, et al. Among authors: sontag e. J Comput Biol. 2007 Sep;14(7):927-49. doi: 10.1089/cmb.2007.0015. J Comput Biol. 2007. PMID: 17803371
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