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146 results
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Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution.
Rogozin IB, Wolf YI, Sorokin AV, Mirkin BG, Koonin EV. Rogozin IB, et al. Among authors: sorokin av. Curr Biol. 2003 Sep 2;13(17):1512-7. doi: 10.1016/s0960-9822(03)00558-x. Curr Biol. 2003. PMID: 12956953
Comparative genomics of the lactic acid bacteria.
Makarova K, Slesarev A, Wolf Y, Sorokin A, Mirkin B, Koonin E, Pavlov A, Pavlova N, Karamychev V, Polouchine N, Shakhova V, Grigoriev I, Lou Y, Rohksar D, Lucas S, Huang K, Goodstein DM, Hawkins T, Plengvidhya V, Welker D, Hughes J, Goh Y, Benson A, Baldwin K, Lee JH, Díaz-Muñiz I, Dosti B, Smeianov V, Wechter W, Barabote R, Lorca G, Altermann E, Barrangou R, Ganesan B, Xie Y, Rawsthorne H, Tamir D, Parker C, Breidt F, Broadbent J, Hutkins R, O'Sullivan D, Steele J, Unlu G, Saier M, Klaenhammer T, Richardson P, Kozyavkin S, Weimer B, Mills D. Makarova K, et al. Proc Natl Acad Sci U S A. 2006 Oct 17;103(42):15611-6. doi: 10.1073/pnas.0607117103. Epub 2006 Oct 9. Proc Natl Acad Sci U S A. 2006. PMID: 17030793 Free PMC article.
Evolution of eukaryotic gene repertoire and gene structure: discovering the unexpected dynamics of genome evolution.
Rogozin IB, Babenko VN, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Mirkin BG, Nikolskaya AN, Rao BS, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA, Koonin EV. Rogozin IB, et al. Among authors: sorokin av. Cold Spring Harb Symp Quant Biol. 2003;68:293-301. doi: 10.1101/sqb.2003.68.293. Cold Spring Harb Symp Quant Biol. 2003. PMID: 15338629 No abstract available.
Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea.
Makarova KS, Sorokin AV, Novichkov PS, Wolf YI, Koonin EV. Makarova KS, et al. Among authors: sorokin av. Biol Direct. 2007 Nov 27;2:33. doi: 10.1186/1745-6150-2-33. Biol Direct. 2007. PMID: 18042280 Free PMC article.
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.
Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA. Koonin EV, et al. Among authors: sorokin av. Genome Biol. 2004;5(2):R7. doi: 10.1186/gb-2004-5-2-r7. Epub 2004 Jan 15. Genome Biol. 2004. PMID: 14759257 Free PMC article.
Purifying and directional selection in overlapping prokaryotic genes.
Rogozin IB, Spiridonov AN, Sorokin AV, Wolf YI, Jordan IK, Tatusov RL, Koonin EV. Rogozin IB, et al. Among authors: sorokin av. Trends Genet. 2002 May;18(5):228-32. doi: 10.1016/s0168-9525(02)02649-5. Trends Genet. 2002. PMID: 12047938
Deinococcus geothermalis: the pool of extreme radiation resistance genes shrinks.
Makarova KS, Omelchenko MV, Gaidamakova EK, Matrosova VY, Vasilenko A, Zhai M, Lapidus A, Copeland A, Kim E, Land M, Mavrommatis K, Pitluck S, Richardson PM, Detter C, Brettin T, Saunders E, Lai B, Ravel B, Kemner KM, Wolf YI, Sorokin A, Gerasimova AV, Gelfand MS, Fredrickson JK, Koonin EV, Daly MJ. Makarova KS, et al. Among authors: sorokin a. PLoS One. 2007 Sep 26;2(9):e955. doi: 10.1371/journal.pone.0000955. PLoS One. 2007. PMID: 17895995 Free PMC article.
Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy.
Hou S, Saw JH, Lee KS, Freitas TA, Belisle C, Kawarabayasi Y, Donachie SP, Pikina A, Galperin MY, Koonin EV, Makarova KS, Omelchenko MV, Sorokin A, Wolf YI, Li QX, Keum YS, Campbell S, Denery J, Aizawa S, Shibata S, Malahoff A, Alam M. Hou S, et al. Proc Natl Acad Sci U S A. 2004 Dec 28;101(52):18036-41. doi: 10.1073/pnas.0407638102. Epub 2004 Dec 13. Proc Natl Acad Sci U S A. 2004. PMID: 15596722 Free PMC article.
The cyanobacterial genome core and the origin of photosynthesis.
Mulkidjanian AY, Koonin EV, Makarova KS, Mekhedov SL, Sorokin A, Wolf YI, Dufresne A, Partensky F, Burd H, Kaznadzey D, Haselkorn R, Galperin MY. Mulkidjanian AY, et al. Proc Natl Acad Sci U S A. 2006 Aug 29;103(35):13126-31. doi: 10.1073/pnas.0605709103. Epub 2006 Aug 21. Proc Natl Acad Sci U S A. 2006. PMID: 16924101 Free PMC article.
A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches.
Kristensen DM, Kannan L, Coleman MK, Wolf YI, Sorokin A, Koonin EV, Mushegian A. Kristensen DM, et al. Bioinformatics. 2010 Jun 15;26(12):1481-7. doi: 10.1093/bioinformatics/btq229. Epub 2010 May 2. Bioinformatics. 2010. PMID: 20439257 Free PMC article.
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