Speed T - Search Results

1

An HMM model for coiled-coil domains and a comparison with PSSM-based predictions.

Delorenzi M, Speed T. Delorenzi M, et al. Among authors: speed t. Bioinformatics. 2002 Apr;18(4):617-25. doi: 10.1093/bioinformatics/18.4.617. Bioinformatics. 2002. PMID: 12016059

2

Identification of proteins from Plasmodium falciparum that are homologous to reticulocyte binding proteins in Plasmodium vivax.

Triglia T, Thompson J, Caruana SR, Delorenzi M, Speed T, Cowman AF. Triglia T, et al. Among authors: speed t. Infect Immun. 2001 Feb;69(2):1084-92. doi: 10.1128/IAI.69.2.1084-1092.2001. Infect Immun. 2001. PMID: 11160005 Free PMC article.

3

A subset of Plasmodium falciparum SERA genes are expressed and appear to play an important role in the erythrocytic cycle.

Miller SK, Good RT, Drew DR, Delorenzi M, Sanders PR, Hodder AN, Speed TP, Cowman AF, de Koning-Ward TF, Crabb BS. Miller SK, et al. Among authors: speed tp. J Biol Chem. 2002 Dec 6;277(49):47524-32. doi: 10.1074/jbc.M206974200. Epub 2002 Sep 11. J Biol Chem. 2002. PMID: 12228245

4

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias.

Bolstad BM, Irizarry RA, Astrand M, Speed TP. Bolstad BM, et al. Among authors: speed tp. Bioinformatics. 2003 Jan 22;19(2):185-93. doi: 10.1093/bioinformatics/19.2.185. Bioinformatics. 2003. PMID: 12538238

5

Exploration, normalization, and summaries of high density oligonucleotide array probe level data.

Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP. Irizarry RA, et al. Biostatistics. 2003 Apr;4(2):249-64. doi: 10.1093/biostatistics/4.2.249. Biostatistics. 2003. PMID: 12925520

6

Enzymic, phylogenetic, and structural characterization of the unusual papain-like protease domain of Plasmodium falciparum SERA5.

Hodder AN, Drew DR, Epa VC, Delorenzi M, Bourgon R, Miller SK, Moritz RL, Frecklington DF, Simpson RJ, Speed TP, Pike RN, Crabb BS. Hodder AN, et al. J Biol Chem. 2003 Nov 28;278(48):48169-77. doi: 10.1074/jbc.M306755200. Epub 2003 Sep 17. J Biol Chem. 2003. PMID: 13679369

7

Normalization of cDNA microarray data.

Smyth GK, Speed T. Smyth GK, et al. Among authors: speed t. Methods. 2003 Dec;31(4):265-73. doi: 10.1016/s1046-2023(03)00155-5. Methods. 2003. PMID: 14597310

8

Mining a tandem mass spectrometry database to determine the trends and global factors influencing peptide fragmentation.

Kapp EA, Schütz F, Reid GE, Eddes JS, Moritz RL, O'Hair RA, Speed TP, Simpson RJ. Kapp EA, et al. Anal Chem. 2003 Nov 15;75(22):6251-64. doi: 10.1021/ac034616t. Anal Chem. 2003. PMID: 14616009

9

Deriving statistical models for predicting peptide tandem MS product ion intensities.

Schütz F, Kapp EA, Simpson RJ, Speed TP. Schütz F, et al. Among authors: speed tp. Biochem Soc Trans. 2003 Dec;31(Pt 6):1479-83. doi: 10.1042/bst0311479. Biochem Soc Trans. 2003. PMID: 14641094 Review.

10

A benchmark for Affymetrix GeneChip expression measures.

Cope LM, Irizarry RA, Jaffee HA, Wu Z, Speed TP. Cope LM, et al. Bioinformatics. 2004 Feb 12;20(3):323-31. doi: 10.1093/bioinformatics/btg410. Bioinformatics. 2004. PMID: 14960458

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