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Epigenetic signatures of stem-cell identity.
Spivakov M, Fisher AG. Spivakov M, et al. Nat Rev Genet. 2007 Apr;8(4):263-71. doi: 10.1038/nrg2046. Nat Rev Genet. 2007. PMID: 17363975 Review.
A dynamic switch in the replication timing of key regulator genes in embryonic stem cells upon neural induction.
Perry P, Sauer S, Billon N, Richardson WD, Spivakov M, Warnes G, Livesey FJ, Merkenschlager M, Fisher AG, Azuara V. Perry P, et al. Among authors: spivakov m. Cell Cycle. 2004 Dec;3(12):1645-50. Epub 2004 Dec 4. Cell Cycle. 2004. PMID: 15611653
Chromatin signatures of pluripotent cell lines.
Azuara V, Perry P, Sauer S, Spivakov M, Jørgensen HF, John RM, Gouti M, Casanova M, Warnes G, Merkenschlager M, Fisher AG. Azuara V, et al. Among authors: spivakov m. Nat Cell Biol. 2006 May;8(5):532-8. doi: 10.1038/ncb1403. Epub 2006 Mar 29. Nat Cell Biol. 2006. PMID: 16570078
The impact of chromatin modifiers on the timing of locus replication in mouse embryonic stem cells.
Jørgensen HF, Azuara V, Amoils S, Spivakov M, Terry A, Nesterova T, Cobb BS, Ramsahoye B, Merkenschlager M, Fisher AG. Jørgensen HF, et al. Among authors: spivakov m. Genome Biol. 2007;8(8):R169. doi: 10.1186/gb-2007-8-8-r169. Genome Biol. 2007. PMID: 17705870 Free PMC article.
Cohesins functionally associate with CTCF on mammalian chromosome arms.
Parelho V, Hadjur S, Spivakov M, Leleu M, Sauer S, Gregson HC, Jarmuz A, Canzonetta C, Webster Z, Nesterova T, Cobb BS, Yokomori K, Dillon N, Aragon L, Fisher AG, Merkenschlager M. Parelho V, et al. Among authors: spivakov m. Cell. 2008 Feb 8;132(3):422-33. doi: 10.1016/j.cell.2008.01.011. Epub 2008 Jan 31. Cell. 2008. PMID: 18237772
T cell receptor signaling controls Foxp3 expression via PI3K, Akt, and mTOR.
Sauer S, Bruno L, Hertweck A, Finlay D, Leleu M, Spivakov M, Knight ZA, Cobb BS, Cantrell D, O'Connor E, Shokat KM, Fisher AG, Merkenschlager M. Sauer S, et al. Among authors: spivakov m. Proc Natl Acad Sci U S A. 2008 Jun 3;105(22):7797-802. doi: 10.1073/pnas.0800928105. Epub 2008 May 28. Proc Natl Acad Sci U S A. 2008. PMID: 18509048 Free PMC article.
Jarid2 is a PRC2 component in embryonic stem cells required for multi-lineage differentiation and recruitment of PRC1 and RNA Polymerase II to developmental regulators.
Landeira D, Sauer S, Poot R, Dvorkina M, Mazzarella L, Jørgensen HF, Pereira CF, Leleu M, Piccolo FM, Spivakov M, Brookes E, Pombo A, Fisher C, Skarnes WC, Snoek T, Bezstarosti K, Demmers J, Klose RJ, Casanova M, Tavares L, Brockdorff N, Merkenschlager M, Fisher AG. Landeira D, et al. Among authors: spivakov m. Nat Cell Biol. 2010 Jun;12(6):618-24. doi: 10.1038/ncb2065. Epub 2010 May 16. Nat Cell Biol. 2010. PMID: 20473294 Free PMC article.
Genome-wide identification of Ikaros targets elucidates its contribution to mouse B-cell lineage specification and pre-B-cell differentiation.
Ferreirós-Vidal I, Carroll T, Taylor B, Terry A, Liang Z, Bruno L, Dharmalingam G, Khadayate S, Cobb BS, Smale ST, Spivakov M, Srivastava P, Petretto E, Fisher AG, Merkenschlager M. Ferreirós-Vidal I, et al. Among authors: spivakov m. Blood. 2013 Mar 7;121(10):1769-82. doi: 10.1182/blood-2012-08-450114. Epub 2013 Jan 9. Blood. 2013. PMID: 23303821
Defining cell type with chromatin profiling.
Spivakov M, Fraser P. Spivakov M, et al. Nat Biotechnol. 2016 Nov 8;34(11):1126-1128. doi: 10.1038/nbt.3724. Nat Biotechnol. 2016. PMID: 27824844 No abstract available.
Lineage-specific dynamic and pre-established enhancer-promoter contacts cooperate in terminal differentiation.
Rubin AJ, Barajas BC, Furlan-Magaril M, Lopez-Pajares V, Mumbach MR, Howard I, Kim DS, Boxer LD, Cairns J, Spivakov M, Wingett SW, Shi M, Zhao Z, Greenleaf WJ, Kundaje A, Snyder M, Chang HY, Fraser P, Khavari PA. Rubin AJ, et al. Among authors: spivakov m. Nat Genet. 2017 Oct;49(10):1522-1528. doi: 10.1038/ng.3935. Epub 2017 Aug 14. Nat Genet. 2017. PMID: 28805829 Free PMC article.
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