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pcaMethods--a bioconductor package providing PCA methods for incomplete data.
Stacklies W, Redestig H, Scholz M, Walther D, Selbig J. Stacklies W, et al. Bioinformatics. 2007 May 1;23(9):1164-7. doi: 10.1093/bioinformatics/btm069. Epub 2007 Mar 7. Bioinformatics. 2007. PMID: 17344241
Implementation of force distribution analysis for molecular dynamics simulations.
Stacklies W, Seifert C, Graeter F. Stacklies W, et al. BMC Bioinformatics. 2011 Apr 18;12:101. doi: 10.1186/1471-2105-12-101. BMC Bioinformatics. 2011. PMID: 21501475 Free PMC article.
Silk fiber mechanics from multiscale force distribution analysis.
Cetinkaya M, Xiao S, Markert B, Stacklies W, Gräter F. Cetinkaya M, et al. Among authors: stacklies w. Biophys J. 2011 Mar 2;100(5):1298-305. doi: 10.1016/j.bpj.2010.12.3712. Biophys J. 2011. PMID: 21354403 Free PMC article.
Mechanical network in titin immunoglobulin from force distribution analysis.
Stacklies W, Vega MC, Wilmanns M, Gräter F. Stacklies W, et al. PLoS Comput Biol. 2009 Mar;5(3):e1000306. doi: 10.1371/journal.pcbi.1000306. Epub 2009 Mar 13. PLoS Comput Biol. 2009. PMID: 19282960 Free PMC article.
Mechanical response of silk crystalline units from force-distribution analysis.
Xiao S, Stacklies W, Cetinkaya M, Markert B, Gräter F. Xiao S, et al. Among authors: stacklies w. Biophys J. 2009 May 20;96(10):3997-4005. doi: 10.1016/j.bpj.2009.02.052. Biophys J. 2009. PMID: 19450471 Free PMC article.
Shear-induced unfolding activates von Willebrand factor A2 domain for proteolysis.
Baldauf C, Schneppenheim R, Stacklies W, Obser T, Pieconka A, Schneppenheim S, Budde U, Zhou J, Gräter F. Baldauf C, et al. Among authors: stacklies w. J Thromb Haemost. 2009 Dec;7(12):2096-105. doi: 10.1111/j.1538-7836.2009.03640.x. Epub 2009 Oct 8. J Thromb Haemost. 2009. PMID: 19817991 Free article.
Dynamic allostery in the methionine repressor revealed by force distribution analysis.
Stacklies W, Xia F, Gräter F. Stacklies W, et al. PLoS Comput Biol. 2009 Nov;5(11):e1000574. doi: 10.1371/journal.pcbi.1000574. Epub 2009 Nov 20. PLoS Comput Biol. 2009. PMID: 19936294 Free PMC article.
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