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Molecular evolution of a microRNA cluster.
Tanzer A, Stadler PF. Tanzer A, et al. J Mol Biol. 2004 May 28;339(2):327-35. doi: 10.1016/j.jmb.2004.03.065. J Mol Biol. 2004. PMID: 15136036
Anisotropy in fitness landscapes.
Stadler PF, GrĂ¼ner W. Stadler PF, et al. J Theor Biol. 1993 Dec 7;165(3):373-88. doi: 10.1006/jtbi.1993.1195. J Theor Biol. 1993. PMID: 7509427
The evolution of diversity in replicator networks.
Happel R, Stadler PF. Happel R, et al. J Theor Biol. 1998 Dec 7;195(3):329-38. doi: 10.1006/jtbi.1998.0797. J Theor Biol. 1998. PMID: 9826487
Autocatalytic replication in a CSTR and constant organization.
Happel R, Stadler PF. Happel R, et al. J Math Biol. 1999 May;38(5):422-34. doi: 10.1007/s002850050155. J Math Biol. 1999. PMID: 10389235
Prediction of RNA base pairing probabilities on massively parallel computers.
Fekete M, Hofacker IL, Stadler PF. Fekete M, et al. J Comput Biol. 2000 Feb-Apr;7(1-2):171-82. doi: 10.1089/10665270050081441. J Comput Biol. 2000. PMID: 10890394
Exploring protein sequence space using knowledge-based potentials.
Babajide A, Farber R, Hofacker IL, Inman J, Lapedes AS, Stadler PF. Babajide A, et al. J Theor Biol. 2001 Sep 7;212(1):35-46. doi: 10.1006/jtbi.2001.2343. J Theor Biol. 2001. PMID: 11527443
Secondary structure prediction for aligned RNA sequences.
Hofacker IL, Fekete M, Stadler PF. Hofacker IL, et al. J Mol Biol. 2002 Jun 21;319(5):1059-66. doi: 10.1016/S0022-2836(02)00308-X. J Mol Biol. 2002. PMID: 12079347
Independent Hox-cluster duplications in lampreys.
Fried C, Prohaska SJ, Stadler PF. Fried C, et al. J Exp Zool B Mol Dev Evol. 2003 Oct 15;299(1):18-25. doi: 10.1002/jez.b.37. J Exp Zool B Mol Dev Evol. 2003. PMID: 14508813
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