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Multiple sequence alignment with user-defined anchor points.
Morgenstern B, Prohaska SJ, Pöhler D, Stadler PF. Morgenstern B, et al. Among authors: stadler pf. Algorithms Mol Biol. 2006 Apr 19;1(1):6. doi: 10.1186/1748-7188-1-6. Algorithms Mol Biol. 2006. PMID: 16722533 Free PMC article.
Molecular evolution of a microRNA cluster.
Tanzer A, Stadler PF. Tanzer A, et al. Among authors: stadler pf. J Mol Biol. 2004 May 28;339(2):327-35. doi: 10.1016/j.jmb.2004.03.065. J Mol Biol. 2004. PMID: 15136036
Multiple sequence alignment with user-defined constraints at GOBICS.
Morgenstern B, Werner N, Prohaska SJ, Steinkamp R, Schneider I, Subramanian AR, Stadler PF, Weyer-Menkhoff J. Morgenstern B, et al. Among authors: stadler pf. Bioinformatics. 2005 Apr 1;21(7):1271-3. doi: 10.1093/bioinformatics/bti142. Epub 2004 Nov 16. Bioinformatics. 2005. PMID: 15546937
Partition function and base pairing probabilities of RNA heterodimers.
Bernhart SH, Tafer H, Mückstein U, Flamm C, Stadler PF, Hofacker IL. Bernhart SH, et al. Among authors: stadler pf. Algorithms Mol Biol. 2006 Mar 16;1(1):3. doi: 10.1186/1748-7188-1-3. Algorithms Mol Biol. 2006. PMID: 16722605 Free PMC article.
Fast local fragment chaining using sum-of-pair gap costs.
Otto C, Hoffmann S, Gorodkin J, Stadler PF. Otto C, et al. Among authors: stadler pf. Algorithms Mol Biol. 2011 Mar 18;6:4. doi: 10.1186/1748-7188-6-4. Algorithms Mol Biol. 2011. PMID: 21418573 Free PMC article.
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