Stadler PF - Search Results

1

tRNAdb 2009: compilation of tRNA sequences and tRNA genes.

Jühling F, Mörl M, Hartmann RK, Sprinzl M, Stadler PF, Pütz J. Jühling F, et al. Among authors: stadler pf. Nucleic Acids Res. 2009 Jan;37(Database issue):D159-62. doi: 10.1093/nar/gkn772. Epub 2008 Oct 28. Nucleic Acids Res. 2009. PMID: 18957446 Free PMC article.

2

Automatic detection of conserved RNA structure elements in complete RNA virus genomes.

Hofacker IL, Fekete M, Flamm C, Huynen MA, Rauscher S, Stolorz PE, Stadler PF. Hofacker IL, et al. Among authors: stadler pf. Nucleic Acids Res. 1998 Aug 15;26(16):3825-36. doi: 10.1093/nar/26.16.3825. Nucleic Acids Res. 1998. PMID: 9685502 Free PMC article.

3

Secondary structure prediction for aligned RNA sequences.

Hofacker IL, Fekete M, Stadler PF. Hofacker IL, et al. Among authors: stadler pf. J Mol Biol. 2002 Jun 21;319(5):1059-66. doi: 10.1016/S0022-2836(02)00308-X. J Mol Biol. 2002. PMID: 12079347

4

Exclusion of repetitive DNA elements from gnathostome Hox clusters.

Fried C, Prohaska SJ, Stadler PF. Fried C, et al. Among authors: stadler pf. J Exp Zool B Mol Dev Evol. 2004 Mar 15;302(2):165-73. doi: 10.1002/jez.b.20007. J Exp Zool B Mol Dev Evol. 2004. PMID: 15054859

5

Surveying phylogenetic footprints in large gene clusters: applications to Hox cluster duplications.

Prohaska SJ, Fried C, Flamm C, Wagner GP, Stadler PF. Prohaska SJ, et al. Among authors: stadler pf. Mol Phylogenet Evol. 2004 May;31(2):581-604. doi: 10.1016/j.ympev.2003.08.009. Mol Phylogenet Evol. 2004. PMID: 15062796

6

Multiple sequence alignments of partially coding nucleic acid sequences.

Stocsits RR, Hofacker IL, Fried C, Stadler PF. Stocsits RR, et al. Among authors: stadler pf. BMC Bioinformatics. 2005 Jun 28;6:160. doi: 10.1186/1471-2105-6-160. BMC Bioinformatics. 2005. PMID: 15985156 Free PMC article.

7

Non-coding RNAs in Ciona intestinalis.

Missal K, Rose D, Stadler PF. Missal K, et al. Among authors: stadler pf. Bioinformatics. 2005 Sep 1;21 Suppl 2:ii77-8. doi: 10.1093/bioinformatics/bti1113. Bioinformatics. 2005. PMID: 16204130

8

Alignments of mitochondrial genome arrangements: applications to metazoan phylogeny.

Fritzsch G, Schlegel M, Stadler PF. Fritzsch G, et al. Among authors: stadler pf. J Theor Biol. 2006 Jun 21;240(4):511-20. doi: 10.1016/j.jtbi.2005.10.010. Epub 2005 Dec 1. J Theor Biol. 2006. PMID: 16325206

9

miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes.

Hsu PW, Huang HD, Hsu SD, Lin LZ, Tsou AP, Tseng CP, Stadler PF, Washietl S, Hofacker IL. Hsu PW, et al. Among authors: stadler pf. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D135-9. doi: 10.1093/nar/gkj135. Nucleic Acids Res. 2006. PMID: 16381831 Free PMC article.

10

Prediction of structured non-coding RNAs in the genomes of the nematodes Caenorhabditis elegans and Caenorhabditis briggsae.

Missal K, Zhu X, Rose D, Deng W, Skogerbø G, Chen R, Stadler PF. Missal K, et al. Among authors: stadler pf. J Exp Zool B Mol Dev Evol. 2006 Jul 15;306(4):379-92. doi: 10.1002/jez.b.21086. J Exp Zool B Mol Dev Evol. 2006. PMID: 16425273

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