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Comparative genomic analysis of fungal genomes reveals intron-rich ancestors.
Stajich JE, Dietrich FS, Roy SW. Stajich JE, et al. Genome Biol. 2007;8(10):R223. doi: 10.1186/gb-2007-8-10-r223. Genome Biol. 2007. PMID: 17949488 Free PMC article.
The Bioperl toolkit: Perl modules for the life sciences.
Stajich JE, Block D, Boulez K, Brenner SE, Chervitz SA, Dagdigian C, Fuellen G, Gilbert JG, Korf I, Lapp H, Lehväslaiho H, Matsalla C, Mungall CJ, Osborne BI, Pocock MR, Schattner P, Senger M, Stein LD, Stupka E, Wilkinson MD, Birney E. Stajich JE, et al. Genome Res. 2002 Oct;12(10):1611-8. doi: 10.1101/gr.361602. Genome Res. 2002. PMID: 12368254 Free PMC article.
The effects of selection against spurious transcription factor binding sites.
Hahn MW, Stajich JE, Wray GA. Hahn MW, et al. Among authors: stajich je. Mol Biol Evol. 2003 Jun;20(6):901-6. doi: 10.1093/molbev/msg096. Epub 2003 Apr 25. Mol Biol Evol. 2003. PMID: 12716998
Disentangling the effects of demography and selection in human history.
Stajich JE, Hahn MW. Stajich JE, et al. Mol Biol Evol. 2005 Jan;22(1):63-73. doi: 10.1093/molbev/msh252. Epub 2004 Sep 8. Mol Biol Evol. 2005. PMID: 15356276
Identification of Cryptococcus neoformans temperature-regulated genes with a genomic-DNA microarray.
Kraus PR, Boily MJ, Giles SS, Stajich JE, Allen A, Cox GM, Dietrich FS, Perfect JR, Heitman J. Kraus PR, et al. Among authors: stajich je. Eukaryot Cell. 2004 Oct;3(5):1249-60. doi: 10.1128/EC.3.5.1249-1260.2004. Eukaryot Cell. 2004. PMID: 15470254 Free PMC article.
Investigating hookworm genomes by comparative analysis of two Ancylostoma species.
Mitreva M, McCarter JP, Arasu P, Hawdon J, Martin J, Dante M, Wylie T, Xu J, Stajich JE, Kapulkin W, Clifton SW, Waterston RH, Wilson RK. Mitreva M, et al. Among authors: stajich je. BMC Genomics. 2005 Apr 26;6:58. doi: 10.1186/1471-2164-6-58. BMC Genomics. 2005. PMID: 15854223 Free PMC article.
Estimating the tempo and mode of gene family evolution from comparative genomic data.
Hahn MW, De Bie T, Stajich JE, Nguyen C, Cristianini N. Hahn MW, et al. Among authors: stajich je. Genome Res. 2005 Aug;15(8):1153-60. doi: 10.1101/gr.3567505. Genome Res. 2005. PMID: 16077014 Free PMC article.
Same-sex mating and the origin of the Vancouver Island Cryptococcus gattii outbreak.
Fraser JA, Giles SS, Wenink EC, Geunes-Boyer SG, Wright JR, Diezmann S, Allen A, Stajich JE, Dietrich FS, Perfect JR, Heitman J. Fraser JA, et al. Among authors: stajich je. Nature. 2005 Oct 27;437(7063):1360-4. doi: 10.1038/nature04220. Epub 2005 Oct 9. Nature. 2005. PMID: 16222245
Comparative analysis of Saccharomyces cerevisiae WW domains and their interacting proteins.
Hesselberth JR, Miller JP, Golob A, Stajich JE, Michaud GA, Fields S. Hesselberth JR, et al. Among authors: stajich je. Genome Biol. 2006;7(4):R30. doi: 10.1186/gb-2006-7-4-r30. Epub 2006 Apr 10. Genome Biol. 2006. PMID: 16606443 Free PMC article.
Evidence of mRNA-mediated intron loss in the human-pathogenic fungus Cryptococcus neoformans.
Stajich JE, Dietrich FS. Stajich JE, et al. Eukaryot Cell. 2006 May;5(5):789-93. doi: 10.1128/EC.5.5.789-793.2006. Eukaryot Cell. 2006. PMID: 16682456 Free PMC article.
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