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A study of the evolution of inverted-topology repeats from LeuT-fold transporters using AlignMe.
Khafizov K, Staritzbichler R, Stamm M, Forrest LR. Khafizov K, et al. Among authors: staritzbichler r. Biochemistry. 2010 Dec 21;49(50):10702-13. doi: 10.1021/bi101256x. Epub 2010 Nov 23. Biochemistry. 2010. PMID: 21073167
Alignment of helical membrane protein sequences using AlignMe.
Stamm M, Staritzbichler R, Khafizov K, Forrest LR. Stamm M, et al. Among authors: staritzbichler r. PLoS One. 2013;8(3):e57731. doi: 10.1371/journal.pone.0057731. Epub 2013 Mar 4. PLoS One. 2013. PMID: 23469223 Free PMC article.
BCL::Fold--de novo prediction of complex and large protein topologies by assembly of secondary structure elements.
Karakaş M, Woetzel N, Staritzbichler R, Alexander N, Weiner BE, Meiler J. Karakaş M, et al. Among authors: staritzbichler r. PLoS One. 2012;7(11):e49240. doi: 10.1371/journal.pone.0049240. Epub 2012 Nov 16. PLoS One. 2012. PMID: 23173050 Free PMC article.
AlignMe--a membrane protein sequence alignment web server.
Stamm M, Staritzbichler R, Khafizov K, Forrest LR. Stamm M, et al. Among authors: staritzbichler r. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W246-51. doi: 10.1093/nar/gku291. Epub 2014 Apr 21. Nucleic Acids Res. 2014. PMID: 24753425 Free PMC article.
Solvent accessible surface area approximations for rapid and accurate protein structure prediction.
Durham E, Dorr B, Woetzel N, Staritzbichler R, Meiler J. Durham E, et al. Among authors: staritzbichler r. J Mol Model. 2009 Sep;15(9):1093-108. doi: 10.1007/s00894-009-0454-9. Epub 2009 Feb 21. J Mol Model. 2009. PMID: 19234730 Free PMC article.
GRIFFIN: A versatile methodology for optimization of protein-lipid interfaces for membrane protein simulations.
Staritzbichler R, Anselmi C, Forrest LR, Faraldo-Gómez JD. Staritzbichler R, et al. J Chem Theory Comput. 2011 Apr 12;7(4):1167-1176. doi: 10.1021/ct100576m. J Chem Theory Comput. 2011. PMID: 24707227 Free PMC article.
BCL::Score--knowledge based energy potentials for ranking protein models represented by idealized secondary structure elements.
Woetzel N, Karakaş M, Staritzbichler R, Müller R, Weiner BE, Meiler J. Woetzel N, et al. Among authors: staritzbichler r. PLoS One. 2012;7(11):e49242. doi: 10.1371/journal.pone.0049242. Epub 2012 Nov 16. PLoS One. 2012. PMID: 23173051 Free PMC article.
EM-fold: De novo folding of alpha-helical proteins guided by intermediate-resolution electron microscopy density maps.
Lindert S, Staritzbichler R, Wötzel N, Karakaş M, Stewart PL, Meiler J. Lindert S, et al. Among authors: staritzbichler r. Structure. 2009 Jul 15;17(7):990-1003. doi: 10.1016/j.str.2009.06.001. Structure. 2009. PMID: 19604479 Free PMC article.
A unified hydrophobicity scale for multispan membrane proteins.
Koehler J, Woetzel N, Staritzbichler R, Sanders CR, Meiler J. Koehler J, et al. Among authors: staritzbichler r. Proteins. 2009 Jul;76(1):13-29. doi: 10.1002/prot.22315. Proteins. 2009. PMID: 19089980 Free PMC article.
Are solvation free energies of homogeneous helical peptides additive?
Staritzbichler R, Gu W, Helms V. Staritzbichler R, et al. J Phys Chem B. 2005 Oct 13;109(40):19000-7. doi: 10.1021/jp052403x. J Phys Chem B. 2005. PMID: 16853446
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