Steemers FJ - Search Results

1

Sequencing thousands of single-cell genomes with combinatorial indexing.

Vitak SA, Torkenczy KA, Rosenkrantz JL, Fields AJ, Christiansen L, Wong MH, Carbone L, Steemers FJ, Adey A. Vitak SA, et al. Among authors: steemers fj. Nat Methods. 2017 Mar;14(3):302-308. doi: 10.1038/nmeth.4154. Epub 2017 Jan 30. Nat Methods. 2017. PMID: 28135258 Free PMC article.

2

A genome-wide scalable SNP genotyping assay using microarray technology.

Gunderson KL, Steemers FJ, Lee G, Mendoza LG, Chee MS. Gunderson KL, et al. Among authors: steemers fj. Nat Genet. 2005 May;37(5):549-54. doi: 10.1038/ng1547. Epub 2005 Apr 17. Nat Genet. 2005. PMID: 15838508

3

Whole-genome genotyping with the single-base extension assay.

Steemers FJ, Chang W, Lee G, Barker DL, Shen R, Gunderson KL. Steemers FJ, et al. Nat Methods. 2006 Jan;3(1):31-3. doi: 10.1038/nmeth842. Nat Methods. 2006. PMID: 16369550

4

Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing.

Amini S, Pushkarev D, Christiansen L, Kostem E, Royce T, Turk C, Pignatelli N, Adey A, Kitzman JO, Vijayan K, Ronaghi M, Shendure J, Gunderson KL, Steemers FJ. Amini S, et al. Among authors: steemers fj. Nat Genet. 2014 Dec;46(12):1343-9. doi: 10.1038/ng.3119. Epub 2014 Oct 19. Nat Genet. 2014. PMID: 25326703 Free PMC article.

5

In vitro, long-range sequence information for de novo genome assembly via transposase contiguity.

Adey A, Kitzman JO, Burton JN, Daza R, Kumar A, Christiansen L, Ronaghi M, Amini S, Gunderson KL, Steemers FJ, Shendure J. Adey A, et al. Among authors: steemers fj. Genome Res. 2014 Dec;24(12):2041-9. doi: 10.1101/gr.178319.114. Epub 2014 Oct 19. Genome Res. 2014. PMID: 25327137 Free PMC article.

6

Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing.

Cusanovich DA, Daza R, Adey A, Pliner HA, Christiansen L, Gunderson KL, Steemers FJ, Trapnell C, Shendure J. Cusanovich DA, et al. Among authors: steemers fj. Science. 2015 May 22;348(6237):910-4. doi: 10.1126/science.aab1601. Epub 2015 May 7. Science. 2015. PMID: 25953818 Free PMC article.

7

PRODUCTION OF A PRELIMINARY QUALITY CONTROL PIPELINE FOR SINGLE NUCLEI RNA-SEQ AND ITS APPLICATION IN THE ANALYSIS OF CELL TYPE DIVERSITY OF POST-MORTEM HUMAN BRAIN NEOCORTEX.

Aevermann B, McCorrison J, Venepally P, Hodge R, Bakken T, Miller J, Novotny M, Tran DN, Diezfuertes F, Christiansen L, Zhang F, Steemers F, Lasken RS, Lein ED, Schork N, Scheuermann RH. Aevermann B, et al. Pac Symp Biocomput. 2017;22:564-575. doi: 10.1142/9789813207813_0052. Pac Symp Biocomput. 2017. PMID: 27897007 Free PMC article.

8

Massively multiplex single-cell Hi-C.

Ramani V, Deng X, Qiu R, Gunderson KL, Steemers FJ, Disteche CM, Noble WS, Duan Z, Shendure J. Ramani V, et al. Among authors: steemers fj. Nat Methods. 2017 Mar;14(3):263-266. doi: 10.1038/nmeth.4155. Epub 2017 Jan 30. Nat Methods. 2017. PMID: 28135255 Free PMC article.

9

Contiguity-Preserving Transposition Sequencing (CPT-Seq) for Genome-Wide Haplotyping, Assembly, and Single-Cell ATAC-Seq.

Christiansen L, Amini S, Zhang F, Ronaghi M, Gunderson KL, Steemers FJ. Christiansen L, et al. Among authors: steemers fj. Methods Mol Biol. 2017;1551:207-221. doi: 10.1007/978-1-4939-6750-6_12. Methods Mol Biol. 2017. PMID: 28138849

10

Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube.

Zhang F, Christiansen L, Thomas J, Pokholok D, Jackson R, Morrell N, Zhao Y, Wiley M, Welch E, Jaeger E, Granat A, Norberg SJ, Halpern A, C Rogert M, Ronaghi M, Shendure J, Gormley N, Gunderson KL, Steemers FJ. Zhang F, et al. Among authors: steemers fj. Nat Biotechnol. 2017 Sep;35(9):852-857. doi: 10.1038/nbt.3897. Epub 2017 Jun 26. Nat Biotechnol. 2017. PMID: 28650462

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